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Sample GSM655

Query DataSets for GSM655

Status

Public on Dec 17, 2001

Title

Pre-BI cells 2b

Sample type

RNA

Source name

Pre-BI cells

Organism

Extracted molecule

total RNA

Description

B220+c-kit+ Pre BI cells sorted out of mouse bone marrow, sort no. 2

Submission date

Nov 27, 2001

Last update date

May 27, 2005

Contact name

Reinhard Hoffmann

E-mail(s)

[email protected]

Phone

+49-89-4140-4155

Organization name

Institute for medical microbiology

Street address

Trogerstr. 30

City

Munich

ZIP/Postal code

81675

Country

Germany

Platform ID

Series (2)

GSE13	Murine bone marrow B cell precursors
GSE272	T and B lymphocyte development profiles

Data table header descriptions
ID_REF	Affymetrix probe set identifier
Experiment Name	Experiment name
POSITIVE	Number of positive probe pairs
NEGATIVE	Number of negative probe pairs
PAIRS	Number of probe set specific probe pairs on the array
PAIRS_USED	Pairs used
PAIRS_IN_AVG	Trimmed probe pair set
POS_FRACTION	Positive/pairs used
Log Avg	Log average
PM Excess	Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM Excess	Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
POS/NEG	Positive/negative
VALUE	Average difference intensity
ABS_CALL	Whether a probe set is present, marginal, or absent; see Affymetrix Literature

Data table
ID_REF	Experiment Name	POSITIVE	NEGATIVE	PAIRS	PAIRS_USED	PAIRS_IN_AVG	POS_FRACTION	Log Avg	PM Excess	MM Excess	POS/NEG	VALUE	ABS_CALL
IL2_at	RHMu2PreB	3	3	19	19	19	0.16	0.04	0	0	1.0	-21	A
IL10_at	RHMu2PreB	5	3	20	20	19	0.25	0.03	0	0	1.7	104	A
GMCSF_at	RHMu2PreB	5	4	20	20	18	0.25	0.22	0	0	1.3	-70	A
TNFRII_at	RHMu2PreB	2	2	20	20	20	0.10	0.39	0	0	1.0	113	A
MIP1-B_at	RHMu2PreB	5	2	20	20	18	0.25	0.51	0	0	2.5	699	A
IL4_at	RHMu2PreB	2	5	20	20	19	0.10	-0.48	0	0	0.4	-322	A
IL12_P40_at	RHMu2PreB	0	1	20	20	19	0.00	-0.22	0	0	0.0	-157	A
TNFa_at	RHMu2PreB	0	1	20	20	18	0.00	0.01	0	0	0.0	-16	A
TCRa_at	RHMu2PreB	1	2	20	20	19	0.05	-0.36	0	0	0.5	-346	A
AFFX-BioB-5_at	RHMu2PreB	1	3	20	20	17	0.05	-0.27	0	0	0.3	-75	A
AFFX-BioB-M_at	RHMu2PreB	1	1	20	20	18	0.05	-0.19	0	0	1.0	-155	A
AFFX-BioB-3_at	RHMu2PreB	2	4	20	20	19	0.10	-0.48	0	0	0.5	-137	A
AFFX-BioC-5_at	RHMu2PreB	11	2	20	20	19	0.55	1.63	0	0	5.5	830	P
AFFX-BioC-3_at	RHMu2PreB	3	1	20	20	19	0.15	0.42	0	0	3.0	291	A
AFFX-BioDn-5_at	RHMu2PreB	5	2	20	20	19	0.25	0.63	0	0	2.5	166	A
AFFX-BioDn-3_at	RHMu2PreB	14	0	20	20	19	0.70	2.82	0	0	Undef	3586	P
AFFX-CreX-5_at	RHMu2PreB	18	0	20	20	19	0.90	4.81	0	0	Undef	5744	P
AFFX-CreX-3_at	RHMu2PreB	18	0	20	20	20	0.90	5.66	0	0	Undef	11985	P
AFFX-BioB-5_st	RHMu2PreB	4	3	20	20	19	0.20	0.68	0	0	1.3	643	A
AFFX-BioB-M_st	RHMu2PreB	1	2	20	20	17	0.05	0.04	0	0	0.5	10	A

Total number of rows: 6595

Table truncated, full table size 404 Kbytes.

Supplementary data files not provided

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