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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 21, 2005 |
| Title |
Bc_p60_2 |
| Sample type |
RNA |
| |
|
| Source name |
Macrophages
|
| Organism |
Mus musculus |
| Characteristics |
BALB/c BMDM infected with WA(pTTS, pP60)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Standard TRIzol
|
| Label |
biotin
|
| Label protocol |
Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
|
| |
|
| Hybridization protocol |
standard Affymetrix procedures
|
| Scan protocol |
standard Affymetrix procedures
|
| Description |
BALB/c BMDM naive
|
| Data processing |
Affymetrix Microarray Suite version 5.0, dchip PM-MM Difference Model
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| |
|
| Submission date |
Jul 21, 2005 |
| Last update date |
Dec 21, 2005 |
| Contact name |
Reinhard Hoffmann |
| E-mail(s) |
[email protected]
|
| Phone |
+49-89-4140-4155
|
| Organization name |
Institute for medical microbiology
|
| Street address |
Trogerstr. 30
|
| City |
Munich |
| ZIP/Postal code |
81675 |
| Country |
Germany |
| |
|
| Platform ID |
GPL339 |
| Series (1) |
| GSE2973 |
Mouse BMDM Yersinia infection |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
dchip PM-MM MBEV |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| 1415670_at |
805.183 |
P |
0.000244 |
| 1415671_at |
2503.5 |
P |
0.000244 |
| 1415672_at |
2249.7 |
P |
0.000244 |
| 1415673_at |
191.289 |
P |
0.005859 |
| 1415674_a_at |
576.943 |
P |
0.000244 |
| 1415675_at |
855.689 |
P |
0.000244 |
| 1415676_a_at |
2013.18 |
P |
0.000244 |
| 1415677_at |
509.899 |
P |
0.018555 |
| 1415678_at |
1659.27 |
P |
0.000244 |
| 1415679_at |
2522.97 |
P |
0.000244 |
| 1415680_at |
1063.43 |
P |
0.001221 |
| 1415681_at |
263.365 |
P |
0.00415 |
| 1415682_at |
515.344 |
P |
0.00415 |
| 1415683_at |
2284.04 |
P |
0.000244 |
| 1415684_at |
400.061 |
P |
0.000244 |
| 1415685_at |
302.248 |
P |
0.000732 |
| 1415686_at |
988.859 |
P |
0.001221 |
| 1415687_a_at |
10153 |
P |
0.000244 |
| 1415688_at |
897.472 |
P |
0.000244 |
| 1415689_s_at |
551.135 |
P |
0.001953 |
Total number of rows: 22690
Table truncated, full table size 672 Kbytes.
| Supplementary data files not provided |
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