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GEO accession:
Sample GSM64988
Query DataSets for GSM64988
Status
Public on Dec 21, 2005
Title
Bc_Mock_1
Sample type
RNA
Source name
Macrophages
Organism
Mus musculus
Characteristics
BALB/c BMDM naive
Extracted molecule
total RNA
Extraction protocol
Standard TRIzol
Label
biotin
Label protocol
Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
BALB/c BMDM naive
Data processing
Affymetrix Microarray Suite version 5.0, dchip PM-MM Difference Model
Submission date
Jul 21, 2005
Last update date
Dec 21, 2005
Contact name
Reinhard Hoffmann
E-mail(s)
[email protected]
Phone
+49-89-4140-4155
Organization name
Institute for medical microbiology
Street address
Trogerstr. 30
City
Munich
ZIP/Postal code
81675
Country
Germany
Platform ID
GPL339
Series (1)
GSE2973
Mouse BMDM Yersinia infection
Data table header descriptions
ID_REF
VALUE
dchip PM-MM MBEV
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
1415670_at
822.75
P
0.000244
1415671_at
2703.17
P
0.000244
1415672_at
3176.28
P
0.000732
1415673_at
227.586
P
0.001953
1415674_a_at
739.158
P
0.000244
1415675_at
812.658
P
0.000244
1415676_a_at
2004.37
P
0.000244
1415677_at
461.98
P
0.018555
1415678_at
1883.38
P
0.000732
1415679_at
2932.39
P
0.000244
1415680_at
1370.98
P
0.000732
1415681_at
808.131
P
0.000244
1415682_at
448.692
P
0.001953
1415683_at
3028.89
P
0.000244
1415684_at
898.099
P
0.000244
1415685_at
399.785
P
0.000244
1415686_at
2075.13
P
0.000244
1415687_a_at
9040.73
P
0.000244
1415688_at
1580.65
P
0.000244
1415689_s_at
906.062
P
0.000732
Total number of rows:
22690
Table truncated, full table size
672 Kbytes
.
Supplementary data files not provided
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