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Sample GSM64892 Query DataSets for GSM64892
Status Public on Apr 11, 2006
Title Treatment: vehicle; time: 6 hrs; repeat: 2; chip B
Sample type RNA
 
Source name LNCaP cells
Organism Homo sapiens
Characteristics LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.
Treatment protocol In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-6413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.
Extracted molecule polyA RNA
Label biotin
 
Description A study of the SARM-regulated gene expression in LNCaP prostate carcinoma cells.
Treated with vehicle for 6 hrs
Data processing Standard Affymetrix scanning/normalization process
 
Submission date Jul 20, 2005
Last update date Apr 10, 2006
Contact name Dmitri A Kazmin
E-mail(s) [email protected]
Organization name Stanford University
Department Institute for Immunity, Transplantation and Infection
Lab Bali Pulendran
Street address 240 Pasteur Dr
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Platform ID GPL97
Series (1)
GSE4636 Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1710_H133B_V6.2_Stat Pairs Probe pairs available (PM/MM)
0068_1710_H133B_V6.2_Stat Pairs Used Probe pairs used (PM/MM)
VALUE Absolute measured signal
ABS_CALL Present/absent call
DETECTION P-VALUE P-value for the P/A call

Data table
ID_REF 0068_1710_H133B_V6.2_Stat Pairs 0068_1710_H133B_V6.2_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 1047.9 P 0.000754
AFFX-BioB-M_at 20 20 2333.6 P 0.000754
AFFX-BioB-3_at 20 20 1349.2 P 0.00011
AFFX-BioC-5_at 20 20 2638.9 P 0.00007
AFFX-BioC-3_at 20 20 2034.5 P 0.00007
AFFX-BioDn-5_at 20 20 3413.4 P 0.000052
AFFX-BioDn-3_at 20 20 14441.8 P 0.00006
AFFX-CreX-5_at 20 20 27953.2 P 0.000044
AFFX-CreX-3_at 20 20 41208.5 P 0.000052
AFFX-DapX-5_at 20 20 14.6 A 0.382599
AFFX-DapX-M_at 20 20 54 A 0.5
AFFX-DapX-3_at 20 20 33.3 A 0.897835
AFFX-LysX-5_at 20 20 15.6 A 0.485109
AFFX-LysX-M_at 20 20 35.1 A 0.686277
AFFX-LysX-3_at 20 20 33.9 A 0.52976
AFFX-PheX-5_at 20 20 12.8 A 0.772364
AFFX-PheX-M_at 20 20 5.4 A 0.988616
AFFX-PheX-3_at 20 20 73.7 A 0.559354
AFFX-ThrX-5_at 20 20 15.4 A 0.672921
AFFX-ThrX-M_at 20 20 27.6 A 0.631562

Total number of rows: 22645

Table truncated, full table size 724 Kbytes.




Supplementary file Size Download File type/resource
GSM64892.CEL.gz 3.2 Mb (ftp)(http) CEL

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