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Sample GSM64887 Query DataSets for GSM64887
Status Public on Apr 11, 2006
Title Treatment: DHT; time: 6 hrs; repeat: 1; chip B
Sample type RNA
 
Source name LNCaP cells
Organism Homo sapiens
Characteristics LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.
Treatment protocol In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-6413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.
Extracted molecule polyA RNA
Label biotin
 
Description A study of the SARM-regulated gene expression in LNCaP prostate carcinoma cells.
Treated with DHT for 6 hrs
Data processing Standard Affymetrix scanning/normalization process
 
Submission date Jul 20, 2005
Last update date Apr 10, 2006
Contact name Dmitri A Kazmin
E-mail(s) [email protected]
Organization name Stanford University
Department Institute for Immunity, Transplantation and Infection
Lab Bali Pulendran
Street address 240 Pasteur Dr
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Platform ID GPL97
Series (1)
GSE4636 Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1705_H133B_T6.1_Stat Pairs Probe pairs available (PM/MM)
0068_1705_H133B_T6.1_Stat Pairs Used Probe pairs used (PM/MM)
VALUE Absolute measured signal
ABS_CALL Present/absent call
DETECTION P-VALUE P-value for the P/A call

Data table
ID_REF 0068_1705_H133B_T6.1_Stat Pairs 0068_1705_H133B_T6.1_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 885 P 0.001102
AFFX-BioB-M_at 20 20 1877.8 P 0.000044
AFFX-BioB-3_at 20 20 1298.2 P 0.000169
AFFX-BioC-5_at 20 20 2401.8 P 0.000081
AFFX-BioC-3_at 20 20 1868.8 P 0.00006
AFFX-BioDn-5_at 20 20 2814.5 P 0.000169
AFFX-BioDn-3_at 20 20 13141.7 P 0.00007
AFFX-CreX-5_at 20 20 22850.4 P 0.000044
AFFX-CreX-3_at 20 20 33579.6 P 0.000044
AFFX-DapX-5_at 20 20 17.3 A 0.51489
AFFX-DapX-M_at 20 20 52.5 A 0.5
AFFX-DapX-3_at 20 20 5.3 A 0.997445
AFFX-LysX-5_at 20 20 13.6 A 0.672921
AFFX-LysX-M_at 20 20 57.8 A 0.559354
AFFX-LysX-3_at 20 20 8.3 A 0.834139
AFFX-PheX-5_at 20 20 7.2 A 0.883887
AFFX-PheX-M_at 20 20 7.4 A 0.971543
AFFX-PheX-3_at 20 20 143.6 A 0.382599
AFFX-ThrX-5_at 20 20 14.1 A 0.868639
AFFX-ThrX-M_at 20 20 34.7 A 0.440646

Total number of rows: 22645

Table truncated, full table size 724 Kbytes.




Supplementary file Size Download File type/resource
GSM64887.CEL.gz 3.2 Mb (ftp)(http) CEL

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