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Sample GSM64853 Query DataSets for GSM64853
Status Public on Apr 11, 2006
Title Treatment: RTI-6413-018; time: 24 hrs; repeat: 1
Sample type RNA
 
Source name LNCaP cells
Organism Homo sapiens
Characteristics LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.
Treatment protocol In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-6413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.
Extracted molecule polyA RNA
Label Biotin
 
Description A study of the SARM-regulated gene expression in LNCaP prostate carcinoma cells.
SARM-treated for 6 hrs
Data processing Standard Affymetrix scanning/normalization process
 
Submission date Jul 19, 2005
Last update date Apr 10, 2006
Contact name Dmitri A Kazmin
E-mail(s) [email protected]
Organization name Stanford University
Department Institute for Immunity, Transplantation and Infection
Lab Bali Pulendran
Street address 240 Pasteur Dr
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Platform ID GPL96
Series (1)
GSE4636 Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1709_H133A_1824.1_Stat Pairs Probe pairs available (PM/MM)
0068_1709_H133A_1824.1_Stat Pairs Used Prove pairs used (PM/MM)
VALUE Absolute measured signal
ABS_CALL Present/absent call
DETECTION P-VALUE P-value for the P/A call

Data table
ID_REF 0068_1709_H133A_1824.1_Stat Pairs 0068_1709_H133A_1824.1_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 298.3 P 0.026111
AFFX-BioB-M_at 20 20 578.1 P 0.000225
AFFX-BioB-3_at 20 20 302.4 P 0.000258
AFFX-BioC-5_at 20 20 747.7 P 0.000195
AFFX-BioC-3_at 20 20 540.2 P 0.000147
AFFX-BioDn-5_at 20 20 828.9 P 0.00007
AFFX-BioDn-3_at 20 20 5128.3 P 0.000195
AFFX-CreX-5_at 20 20 7303.1 P 0.000044
AFFX-CreX-3_at 20 20 10563.8 P 0.000044
AFFX-DapX-5_at 20 20 23.9 A 0.39692
AFFX-DapX-M_at 20 20 35.1 A 0.205732
AFFX-DapX-3_at 20 20 6.5 A 0.794268
AFFX-LysX-5_at 20 20 25 A 0.216524
AFFX-LysX-M_at 20 20 8.7 A 0.645547
AFFX-LysX-3_at 20 20 11.5 A 0.686277
AFFX-PheX-5_at 20 20 7.8 A 0.631562
AFFX-PheX-M_at 20 20 2.4 A 0.852061
AFFX-PheX-3_at 20 20 18.2 A 0.645547
AFFX-ThrX-5_at 20 20 9.2 A 0.672921
AFFX-ThrX-M_at 20 20 7.1 A 0.645547

Total number of rows: 22283

Table truncated, full table size 723 Kbytes.




Supplementary file Size Download File type/resource
GSM64853.CEL.gz 3.5 Mb (ftp)(http) CEL

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