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Sample GSM646893 Query DataSets for GSM646893
Status Public on Jan 20, 2012
Title WT2
Sample type RNA
 
Source name Total RNA from murine bone-marrow derived macrophages
Organism Mus musculus
Characteristics treatment: unstimulated
cell type: murine bone-marrow derived macrophages
genotype: wild type
genetic background: 129sv
Extracted molecule total RNA
Extraction protocol RNeasy Kit QIAGEN
Label Biotin
Label protocol 100-300 ng of total RNA were amplified and labeled using the WT Sense Target labeling system and control reagents (Affymetrix)
 
Hybridization protocol Sample was hybridized to Mouse Gene 1.0 ST Array (Affymetrix) using a GeneChip Hybridization Oven 640
Scan protocol GeneChip was scanned using Affymetrix GeneChip Scanner 7G
Description Gene expression data from murine bone-marrow derived macrophages
Data processing The data were analyzed using the RMA algorithm and then SAM was applied to calculate significant differential expression between samples
 
Submission date Dec 29, 2010
Last update date Jan 20, 2012
Contact name Cristina Lopez-Rodriguez
E-mail(s) [email protected]
Phone +34 93 316 0810
Organization name Universitat Pompeu Fabra
Department Medicine and Life Sciences
Lab Immunology
Street address Carrer Dr. Aiguader, 88
City Barcelona
ZIP/Postal code 08003
Country Spain
 
Platform ID GPL6246
Series (1)
GSE26343 Gene expression from bone-marrow derived macrophages.

Data table header descriptions
ID_REF
VALUE RMA-calculated signal intensity

Data table
ID_REF VALUE
10338001 11.2933575600379
10338003 9.5272356025736
10338004 8.4395272726904
10338017 12.4638893359810
10338025 8.2667567853143
10338026 12.8667185664254
10338029 8.37910137501673
10338035 8.40724540002886
10338036 8.4747661240357
10338037 4.44904436499249
10338041 10.2112860798217
10338042 9.4407441402089
10338044 11.3279906992589
10338047 7.40525520403667
10338056 4.13871948756684
10338059 12.8584443223625
10338060 4.20759171220679
10338063 4.22561117119862
10338064 6.05803700005314
10338065 7.293728657792

Total number of rows: 34760

Table truncated, full table size 878 Kbytes.




Supplementary file Size Download File type/resource
GSM646893_5.Exp2-WT2_MoGene-1_0-st-v1_.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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