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Sample GSM638736 Query DataSets for GSM638736
Status Public on Feb 15, 2011
Title WA07P40OPC_48_180_1_4
Sample type genomic
 
Source name Differentiated hESC, oligodendrocyte precursor cells
Organism Homo sapiens
Characteristics cell type: HESC_Diff
passage number: 40
Extracted molecule genomic DNA
Extraction protocol Qiagen DNeasy Blood and Tissue Kit
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol Scanned on a BeadArray Reader (Illumina) using standard Illumina Protocol.
Description Genomic DNA extracted was genotyped using HumanOmni1-Quad BeadChip Genotyping BeadChips (Illumina).
Data processing We have used the Illumina Genome Studio software version 2010.2 to generate the SNP calls.
 
Submission date Dec 11, 2010
Last update date Feb 15, 2011
Contact name GULSAH ALTUN
E-mail(s) [email protected]
Phone (858) 784 7753
Fax (858) 784 7211
Organization name THE SCRIPPS RESEARCH INSTITUTE
Street address 3030 Science Park Rd. 3rd floor, room 3020
City SAN DIEGO
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL8882
Series (1)
GSE25925 Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ES and iPS Cells during Reprogramming and Time in Culture

Data table header descriptions
ID_REF
VALUE SNP calls
WA07P40OPC_48_180_1_4.Score
WA07P40OPC_48_180_1_4.Theta
WA07P40OPC_48_180_1_4.R
WA07P40OPC_48_180_1_4.B Allele Freq
WA07P40OPC_48_180_1_4.Log R Ratio

Data table
ID_REF VALUE WA07P40OPC_48_180_1_4.Score WA07P40OPC_48_180_1_4.Theta WA07P40OPC_48_180_1_4.R WA07P40OPC_48_180_1_4.B Allele Freq WA07P40OPC_48_180_1_4.Log R Ratio
200006 BB 0.8273118 0.9768996 1.819687 0.9921554 0.05220169
200052 BB 0.9487 0.9968365 0.7692248 1 -0.3243563
200053 AA 0.6644778 0.1125081 1.307119 0.03850023 -0.3091513
200070 AB 0.9347444 0.5494395 0.4410804 0.4653169 -0.7079188
200078 BB 0.6884917 0.9752075 1.930973 1 -0.005812583
200087 AA 0.8084779 0.06068305 0.8861858 0.005596328 -0.4272824
200096 BB 0.9041256 0.9865191 1.010807 1 -0.1324917
200124 BB 0.877098 0.9812554 1.040223 1 -0.02170204
200199 BB 0.9437442 0.9911605 1.03196 1 0.1567602
400630 AA 0.8781115 0.00 0.6621562 0.00 -0.09909884
401327 AB 0.8785409 0.6126873 1.055179 0.5065767 -0.01338549
401753 BB 0.630483 0.9643394 1.04926 1 -0.2927652
500301 BB 0.9310601 0.9823688 1.10658 1 -0.05833256
500556 BB 0.8736695 0.9809111 1.119776 1 0.005875502
500660 AA 0.5118521 0.01489632 1.183331 0.00 0.1214444
500694 AB 0.715772 0.351637 1.086852 0.4744605 -0.4564292
500710 AB 0.7286785 0.5145096 1.872034 0.5325603 0.1665462
ABO_SNP1 BB 0.3991952 0.982732 1.765159 1 0.1518784
DI_SNP1 BB 0.5118521 0.9807357 1.045332 1 -0.02224799
FY_SNP2 BB 0.4958491 0.9801559 0.9348597 1 0.05153971

Total number of rows: 1048713

Table truncated, full table size 60867 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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