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Sample GSM638718 Query DataSets for GSM638718
Status Public on Feb 15, 2011
Title ES4CL2P17_131_387_3_1
Sample type genomic
 
Source name Undifferentiated hiPSC, generated from hESC line differentiated into fibroblast-like cells
Organism Homo sapiens
Characteristics cell type: HIPSC
passage number: 17
Extracted molecule genomic DNA
Extraction protocol Qiagen DNeasy Blood and Tissue Kit
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol Scanned on a BeadArray Reader (Illumina) using standard Illumina Protocol.
Description Genomic DNA extracted was genotyped using HumanOmni1-Quad BeadChip Genotyping BeadChips (Illumina).
Data processing We have used the Illumina Genome Studio software version 2010.2 to generate the SNP calls.
 
Submission date Dec 11, 2010
Last update date Feb 15, 2011
Contact name GULSAH ALTUN
E-mail(s) [email protected]
Phone (858) 784 7753
Fax (858) 784 7211
Organization name THE SCRIPPS RESEARCH INSTITUTE
Street address 3030 Science Park Rd. 3rd floor, room 3020
City SAN DIEGO
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL8882
Series (1)
GSE25925 Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ES and iPS Cells during Reprogramming and Time in Culture

Data table header descriptions
ID_REF
VALUE SNP calls
ES4CL2P17_131_387_3_1.Score
ES4CL2P17_131_387_3_1.Theta
ES4CL2P17_131_387_3_1.R
ES4CL2P17_131_387_3_1.B Allele Freq
ES4CL2P17_131_387_3_1.Log R Ratio

Data table
ID_REF VALUE ES4CL2P17_131_387_3_1.Score ES4CL2P17_131_387_3_1.Theta ES4CL2P17_131_387_3_1.R ES4CL2P17_131_387_3_1.B Allele Freq ES4CL2P17_131_387_3_1.Log R Ratio
200006 BB 0.8273118 0.9838325 1.618507 0.998552 -0.1095567
200052 BB 0.9487 0.9859819 0.9153432 1 -0.08593784
200053 AA 0.6644778 0.11359 1.331579 0.04011508 -0.2828645
200070 AA 0.9347444 0.001341638 0.5834125 0.00 -0.007012409
200078 BB 0.6884917 0.9661943 1.79194 0.9921069 -0.1253106
200087 AB 0.8084779 0.5919396 1.570369 0.5502498 0.07136235
200096 BB 0.9041256 0.9894319 1.124803 1 0.02496767
200124 AA 0.877098 0.01751166 0.7909166 0.00 -0.2252904
200199 AA 0.9437442 0.01379191 0.9604189 0.00 -0.1629668
400630 AA 0.8781115 0.01398615 0.7184969 0.00 0.004852404
401327 AA 0.8785409 0.03962756 0.9564037 0.00 0.1645363
401753 BB 0.630483 0.9571289 1.144449 0.9992799 -0.1752598
500301 BB 0.9310601 0.9779102 1.088644 0.9968019 -0.08522775
500556 AB 0.8736695 0.6620619 1.108025 0.5198774 -0.1021401
500660 AA 0.5118521 0.01975866 1.183452 0.00 0.1181697
500694 AB 0.715772 0.3953195 1.410183 0.523008 -0.05897111
500710 AA 0.7286785 0.02060133 1.187036 0.00 -0.1770533
ABO_SNP1 BB 0.3991952 0.9752064 1.55051 0.9986084 -0.04360115
DI_SNP1 BB 0.5118521 0.9794723 0.9610931 1 -0.1445017
FY_SNP2 BB 0.4958491 0.9775335 1.010357 1 0.1617133

Total number of rows: 1048713

Table truncated, full table size 61222 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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