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Sample GSM638705 Query DataSets for GSM638705
Status Public on Feb 15, 2011
Title IMR90C4P27_135_394_3_1B
Sample type genomic
 
Source name Undifferentiated hiPSC, generated from lung epithelial fibroblasts
Organism Homo sapiens
Characteristics cell type: HIPSC
passage number: 27
Extracted molecule genomic DNA
Extraction protocol Qiagen DNeasy Blood and Tissue Kit
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol Scanned on a BeadArray Reader (Illumina) using standard Illumina Protocol.
Description Genomic DNA extracted was genotyped using HumanOmni1-Quad BeadChip Genotyping BeadChips (Illumina).
Data processing We have used the Illumina Genome Studio software version 2010.2 to generate the SNP calls.
 
Submission date Dec 11, 2010
Last update date Feb 15, 2011
Contact name GULSAH ALTUN
E-mail(s) [email protected]
Phone (858) 784 7753
Fax (858) 784 7211
Organization name THE SCRIPPS RESEARCH INSTITUTE
Street address 3030 Science Park Rd. 3rd floor, room 3020
City SAN DIEGO
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL8882
Series (1)
GSE25925 Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ES and iPS Cells during Reprogramming and Time in Culture

Data table header descriptions
ID_REF
VALUE SNP calls
IMR90C4P27_135_394_3_1B.Score
IMR90C4P27_135_394_3_1B.Theta
IMR90C4P27_135_394_3_1B.R
IMR90C4P27_135_394_3_1B.B Allele Freq
IMR90C4P27_135_394_3_1B.Log R Ratio

Data table
ID_REF VALUE IMR90C4P27_135_394_3_1B.Score IMR90C4P27_135_394_3_1B.Theta IMR90C4P27_135_394_3_1B.R IMR90C4P27_135_394_3_1B.B Allele Freq IMR90C4P27_135_394_3_1B.Log R Ratio
200006 AB 0.8273118 0.4800678 2.651576 0.5337635 0.1516016
200052 BB 0.9487 0.9915516 0.8812619 1 -0.1342849
200053 AA 0.6644778 0.1030881 1.404891 0.02443954 -0.2010669
200070 AB 0.9347444 0.5335653 0.5979037 0.4514196 -0.2612419
200078 AB 0.6884917 0.601068 2.843728 0.5723435 0.1327813
200087 AA 0.8084779 0.05610596 0.8540508 0.0009789743 -0.4769431
200096 BB 0.9041256 0.9941632 1.060021 1 -0.05524407
200124 BB 0.877098 0.9853184 1.096532 1 0.05689681
200199 BB 0.9437442 0.9906104 0.8834702 1 -0.06787799
400630 AA 0.8781115 0.0009545569 0.6445372 0.00 -0.138957
401327 AB 0.8785409 0.659964 1.040694 0.5705674 -0.004656369
401753 AB 0.630483 0.5084946 1.543501 0.5198767 -0.1599407
500301 BB 0.9310601 0.9960191 1.009155 1 -0.1810847
500556 AA 0.8736695 0.03215737 0.6429851 0.00 -0.412441
500660 AA 0.5118521 0.02787703 1.070373 0.003623014 -0.03241365
500694 BB 0.715772 0.9744724 0.9329779 1 -0.03235349
500710 AA 0.7286785 0.02895788 1.191639 0.004542942 -0.1780744
ABO_SNP1 BB 0.3991952 0.9741235 1.704722 0.9974711 0.09198379
DI_SNP1 BB 0.5118521 0.9731237 1.019606 0.9986511 -0.06445859
FY_SNP2 BB 0.4958491 0.9790916 0.8549877 1 -0.07806583

Total number of rows: 1048713

Table truncated, full table size 61249 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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