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Sample GSM638701 Query DataSets for GSM638701
Status Public on Feb 15, 2011
Title HDK68IPS1_221_574_1_1
Sample type genomic
 
Source name Undifferentiated hiPSC, generated from primary keratinocytes
Organism Homo sapiens
Characteristics cell type: HIPSC
passage number: unknown
Extracted molecule genomic DNA
Extraction protocol Qiagen DNeasy Blood and Tissue Kit
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol Scanned on a BeadArray Reader (Illumina) using standard Illumina Protocol.
Description Genomic DNA extracted was genotyped using HumanOmni1-Quad BeadChip Genotyping BeadChips (Illumina).
Data processing We have used the Illumina Genome Studio software version 2010.2 to generate the SNP calls.
 
Submission date Dec 11, 2010
Last update date Feb 15, 2011
Contact name GULSAH ALTUN
E-mail(s) [email protected]
Phone (858) 784 7753
Fax (858) 784 7211
Organization name THE SCRIPPS RESEARCH INSTITUTE
Street address 3030 Science Park Rd. 3rd floor, room 3020
City SAN DIEGO
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL8882
Series (1)
GSE25925 Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ES and iPS Cells during Reprogramming and Time in Culture

Data table header descriptions
ID_REF
VALUE SNP calls
HDK68IPS1_221_574_1_1.Score
HDK68IPS1_221_574_1_1.Theta
HDK68IPS1_221_574_1_1.R
HDK68IPS1_221_574_1_1.B Allele Freq
HDK68IPS1_221_574_1_1.Log R Ratio

Data table
ID_REF VALUE HDK68IPS1_221_574_1_1.Score HDK68IPS1_221_574_1_1.Theta HDK68IPS1_221_574_1_1.R HDK68IPS1_221_574_1_1.B Allele Freq HDK68IPS1_221_574_1_1.Log R Ratio
200006 BB 0.8273118 0.9822522 1.689647 0.9970939 -0.04915776
200052 AB 0.9487 0.4839428 1.167016 0.5026324 -0.2195318
200053 AB 0.6644778 0.4711716 1.517424 0.5483598 -0.1832372
200070 AB 0.9347444 0.5996593 0.7328564 0.5132555 0.006522124
200078 BB 0.6884917 0.9708968 1.792464 0.9975132 -0.1188002
200087 AA 0.8084779 0.04340548 0.8635942 0.00 -0.4508001
200096 BB 0.9041256 0.9918909 1.133331 1 0.03865128
200124 AB 0.877098 0.6318465 1.286899 0.517336 0.0817919
200199 BB 0.9437442 0.9958659 1.040673 1 0.1732151
400630 AA 0.8781115 0.0009111171 0.6100466 0.00 -0.2182579
401327 AA 0.8785409 0.02764856 0.7250869 0.00 -0.2272868
401753 AB 0.630483 0.4672029 1.53041 0.4716555 -0.1682853
500301 BB 0.9310601 0.9870661 1.067759 1 -0.1063504
500556 BB 0.8736695 0.9858117 0.987887 1 -0.1734426
500660 AA 0.5118521 0.006406022 1.106902 0.00 0.03111239
500694 BB 0.715772 0.9737213 0.9314908 1 -0.03566416
500710 AB 0.7286785 0.5051843 1.539539 0.521624 -0.1206696
ABO_SNP1 BB 0.3991952 0.9746695 1.503806 0.9980445 -0.0883254
DI_SNP1 BB 0.5118521 0.9850746 0.9855241 1 -0.1036644
FY_SNP2 BB 0.4958491 0.9718232 0.8525863 1 -0.08729967

Total number of rows: 1048713

Table truncated, full table size 60692 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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