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Sample GSM638674 Query DataSets for GSM638674
Status Public on Feb 15, 2011
Title HDF51IPS12P33_163_651_1_3
Sample type genomic
 
Source name Undifferentiated hiPSC, generated from human dermal fibroblasts
Organism Homo sapiens
Characteristics cell type: HIPSC
passage number: 33
Extracted molecule genomic DNA
Extraction protocol Qiagen DNeasy Blood and Tissue Kit
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol Scanned on a BeadArray Reader (Illumina) using standard Illumina Protocol.
Description Genomic DNA extracted was genotyped using HumanOmni1-Quad BeadChip Genotyping BeadChips (Illumina).
Data processing We have used the Illumina Genome Studio software version 2010.2 to generate the SNP calls.
 
Submission date Dec 11, 2010
Last update date Feb 15, 2011
Contact name GULSAH ALTUN
E-mail(s) [email protected]
Phone (858) 784 7753
Fax (858) 784 7211
Organization name THE SCRIPPS RESEARCH INSTITUTE
Street address 3030 Science Park Rd. 3rd floor, room 3020
City SAN DIEGO
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL8882
Series (1)
GSE25925 Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ES and iPS Cells during Reprogramming and Time in Culture

Data table header descriptions
ID_REF
VALUE SNP calls
HDF51IPS12P33_163_651_1_3.Score
HDF51IPS12P33_163_651_1_3.Theta
HDF51IPS12P33_163_651_1_3.R
HDF51IPS12P33_163_651_1_3.B Allele Freq
HDF51IPS12P33_163_651_1_3.Log R Ratio

Data table
ID_REF VALUE HDF51IPS12P33_163_651_1_3.Score HDF51IPS12P33_163_651_1_3.Theta HDF51IPS12P33_163_651_1_3.R HDF51IPS12P33_163_651_1_3.B Allele Freq HDF51IPS12P33_163_651_1_3.Log R Ratio
200006 AB 0.8273118 0.4465889 2.686887 0.5028749 0.145173
200052 BB 0.9487 0.9914824 0.8857509 1 -0.1270343
200053 AA 0.6644778 0.1192584 1.304447 0.04857608 -0.3149749
200070 AB 0.9224682 0.7080447 0.463882 0.6487531 -0.6404161
200078 AB 0.6884917 0.5277261 2.640813 0.4888203 -0.02290974
200087 AB 0.8084779 0.6445404 1.26983 0.6144611 -0.2134467
200096 BB 0.9041256 0.9877981 1.103848 1 -0.004012858
200124 AB 0.877098 0.648479 1.265974 0.5405298 0.0672044
200199 AB 0.9437442 0.4488201 1.16118 0.4942589 -0.09513582
400630 AA 0.8781115 0.01548177 0.6835139 0.00 -0.06863297
401327 BB 0.8785409 0.9879013 1.209401 1 0.4284005
401753 AB 0.630483 0.5110881 1.487407 0.522648 -0.2112553
500301 BB 0.9310601 0.9891649 1.175185 1 0.0335203
500556 AA 0.8736695 0.02940264 0.8002663 0.00 -0.09420996
500660 AA 0.5118521 0.02114594 1.218297 0.00 0.1590586
500694 BB 0.715772 0.9794703 0.846768 1 -0.1654955
500710 AA 0.7286785 0.0162173 1.311361 0.00 -0.02987409
ABO_SNP1 BB 0.3991952 0.982692 1.602777 1 0.01260902
DI_SNP1 BB 0.5118521 0.9722397 1.049756 0.9977207 -0.02314085
FY_SNP2 BB 0.4958491 0.9715624 1.070515 1 0.2409019

Total number of rows: 1048713

Table truncated, full table size 61118 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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