NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM638652 Query DataSets for GSM638652
Status Public on Feb 15, 2011
Title WA01 _3_686_2_2
Sample type genomic
 
Source name Undifferentiated hESC
Organism Homo sapiens
Characteristics cell type: HESC
passage number: unknown
Extracted molecule genomic DNA
Extraction protocol Qiagen DNeasy Blood and Tissue Kit
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol Scanned on a BeadArray Reader (Illumina) using standard Illumina Protocol.
Description Genomic DNA extracted was genotyped using HumanOmni1-Quad BeadChip Genotyping BeadChips (Illumina).
Data processing We have used the Illumina Genome Studio software version 2010.2 to generate the SNP calls.
 
Submission date Dec 11, 2010
Last update date Feb 15, 2011
Contact name GULSAH ALTUN
E-mail(s) [email protected]
Phone (858) 784 7753
Fax (858) 784 7211
Organization name THE SCRIPPS RESEARCH INSTITUTE
Street address 3030 Science Park Rd. 3rd floor, room 3020
City SAN DIEGO
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL8882
Series (1)
GSE25925 Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ES and iPS Cells during Reprogramming and Time in Culture

Data table header descriptions
ID_REF
VALUE SNP calls
WA01 _3_686_2_2.Score
WA01 _3_686_2_2.Theta
WA01 _3_686_2_2.R
WA01 _3_686_2_2.B Allele Freq
WA01 _3_686_2_2.Log R Ratio

Data table
ID_REF VALUE WA01 _3_686_2_2.Score WA01 _3_686_2_2.Theta WA01 _3_686_2_2.R WA01 _3_686_2_2.B Allele Freq WA01 _3_686_2_2.Log R Ratio
200006 AA 0.8273118 0.02151125 2.355551 0.00 0.2174745
200052 BB 0.9487 0.9989828 0.8295691 1 -0.2129172
200053 AA 0.6644778 0.114466 1.375816 0.04142274 -0.2360875
200070 AA 0.9347444 0.006742857 0.3507268 0.00 -0.7444325
200078 BB 0.6884917 0.9781709 2.047763 1 0.08277342
200087 AB 0.8084779 0.6243058 1.336383 0.5897601 -0.1481193
200096 BB 0.9041256 0.9876145 1.153719 1 0.0595298
200124 AB 0.877098 0.6670282 1.313288 0.5663964 0.1303163
200199 AB 0.9437442 0.4712974 1.109939 0.5163772 -0.1503505
400630 AA 0.8781115 0.00 0.7468352 0.00 0.07451961
401327 AA 0.8785409 0.04035353 0.9892714 0.00 0.2128211
401753 AB 0.630483 0.5442237 1.389383 0.5580562 -0.282616
500301 AB 0.9310601 0.5577127 1.35253 0.5280735 -0.05489199
500556 AA 0.8736695 0.02685117 0.7544729 0.00 -0.1768682
500660 AA 0.5118521 0.0123879 1.150519 0.00 0.08264301
500694 AB 0.715772 0.391243 1.265351 0.5196253 -0.2188707
500710 AB 0.7286785 0.5087989 1.763601 0.5258631 0.07733421
ABO_SNP1 BB 0.3991952 0.9806487 1.623977 1 0.02927476
DI_SNP1 BB 0.5118521 0.9884529 1.002303 1 -0.07651364
FY_SNP2 BB 0.4958491 0.987008 0.9452685 1 0.07241314

Total number of rows: 1048713

Table truncated, full table size 60382 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap