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Sample GSM638434 Query DataSets for GSM638434
Status Public on Feb 15, 2011
Title SIVF022P48_121_768_1_3
Sample type genomic
 
Source name Undifferentiated hESC
Organism Homo sapiens
Characteristics cell type: HESC
passage number: 48
Extracted molecule genomic DNA
Extraction protocol Qiagen DNeasy Blood and Tissue Kit
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol Scanned on a BeadArray Reader (Illumina) using standard Illumina Protocol.
Description Genomic DNA extracted was genotyped using HumanOmni1-Quad BeadChip Genotyping BeadChips (Illumina).
Data processing We have used the Illumina Genome Studio software version 2010.2 to generate the SNP calls.
 
Submission date Dec 11, 2010
Last update date Feb 15, 2011
Contact name GULSAH ALTUN
E-mail(s) [email protected]
Phone (858) 784 7753
Fax (858) 784 7211
Organization name THE SCRIPPS RESEARCH INSTITUTE
Street address 3030 Science Park Rd. 3rd floor, room 3020
City SAN DIEGO
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL8882
Series (1)
GSE25925 Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ES and iPS Cells during Reprogramming and Time in Culture

Data table header descriptions
ID_REF
VALUE SNP calls
SIVF022P48_121_768_1_3.Score
SIVF022P48_121_768_1_3.Theta
SIVF022P48_121_768_1_3.R
SIVF022P48_121_768_1_3.B Allele Freq
SIVF022P48_121_768_1_3.Log R Ratio

Data table
ID_REF VALUE SIVF022P48_121_768_1_3.Score SIVF022P48_121_768_1_3.Theta SIVF022P48_121_768_1_3.R SIVF022P48_121_768_1_3.B Allele Freq SIVF022P48_121_768_1_3.Log R Ratio
200006 BB 0.8273118 0.9903933 1.993816 1 0.1982247
200052 BB 0.9487 0.9992099 0.9551691 1 -0.009260309
200053 AA 0.6644778 0.1159262 1.473749 0.04360228 -0.1375054
200070 AB 0.9347444 0.6387864 0.3695043 0.5621701 -0.9767973
200078 AB 0.6884917 0.5777217 2.808495 0.5455038 0.09224129
200087 AA 0.8084779 0.0587921 0.9066335 0.003688741 -0.392875
200096 BB 0.9041256 0.9754086 1.069669 0.9929079 -0.0633334
200124 AB 0.877098 0.6795737 1.267161 0.5838908 0.08565609
200199 AA 0.9437442 0.0268554 0.8556885 0.001137368 -0.3361799
400630 AA 0.8781115 0.00 0.7498087 0.00 0.08025201
401327 BB 0.8785409 0.9836751 1.262976 1 0.4879305
401753 AB 0.630483 0.5602232 1.43624 0.575153 -0.2215462
500301 BB 0.9310601 0.9944812 1.155423 1 0.01303501
500556 AA 0.8736695 0.04004152 0.7999315 0.00 -0.1045839
500660 AA 0.5118521 0.01086747 1.302265 0.00 0.2624546
500694 AA 0.715772 0.05579878 1.241869 0.000916623 -0.2212099
500710 BB 0.7286785 0.9168968 1.407578 1 -0.005215158
ABO_SNP1 BB 0.3991952 0.9834391 1.681316 1 0.08246565
DI_SNP1 BB 0.5118521 0.9857076 0.9762094 1 -0.1168417
FY_SNP2 BB 0.4958491 0.9803156 0.9167908 1 0.02349651

Total number of rows: 1048713

Table truncated, full table size 61086 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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