NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM638421 Query DataSets for GSM638421
Status Public on Feb 15, 2011
Title SIVF016P19_275_745_1_3
Sample type genomic
 
Source name Undifferentiated hESC
Organism Homo sapiens
Characteristics cell type: HESC
passage number: 19
Extracted molecule genomic DNA
Extraction protocol Qiagen DNeasy Blood and Tissue Kit
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol Scanned on a BeadArray Reader (Illumina) using standard Illumina Protocol.
Description Genomic DNA extracted was genotyped using HumanOmni1-Quad BeadChip Genotyping BeadChips (Illumina).
Data processing We have used the Illumina Genome Studio software version 2010.2 to generate the SNP calls.
 
Submission date Dec 11, 2010
Last update date Feb 15, 2011
Contact name GULSAH ALTUN
E-mail(s) [email protected]
Phone (858) 784 7753
Fax (858) 784 7211
Organization name THE SCRIPPS RESEARCH INSTITUTE
Street address 3030 Science Park Rd. 3rd floor, room 3020
City SAN DIEGO
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL8882
Series (1)
GSE25925 Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ES and iPS Cells during Reprogramming and Time in Culture

Data table header descriptions
ID_REF
VALUE SNP calls
SIVF016P19_275_745_1_3.Score
SIVF016P19_275_745_1_3.Theta
SIVF016P19_275_745_1_3.R
SIVF016P19_275_745_1_3.B Allele Freq
SIVF016P19_275_745_1_3.Log R Ratio

Data table
ID_REF VALUE SIVF016P19_275_745_1_3.Score SIVF016P19_275_745_1_3.Theta SIVF016P19_275_745_1_3.R SIVF016P19_275_745_1_3.B Allele Freq SIVF016P19_275_745_1_3.Log R Ratio
200006 BB 0.8273118 0.9820866 1.67607 0.9969412 -0.0609711
200052 BB 0.9487 0.9974617 0.8641652 1 -0.1557318
200053 AA 0.6644778 0.1242524 1.370533 0.05603032 -0.2457977
200070 AB 0.9347444 0.6074083 0.5108472 0.5229429 -0.5132028
200078 AB 0.6884917 0.5572344 2.716548 0.5219508 0.02471291
200087 AA 0.8084779 0.05446025 0.9900347 0.00 -0.2624796
200096 BB 0.9041256 0.9410737 1.074085 0.9600418 -0.09534517
200124 AB 0.877098 0.651283 1.192311 0.5444399 -0.01774908
200199 AB 0.9437442 0.5034151 1.022692 0.5463234 -0.2461358
400630 AA 0.8781115 0.01034226 0.7093701 0.00 -0.009992926
401327 AB 0.8785409 0.6701511 1.380947 0.584356 0.4097098
401753 AB 0.630483 0.5389138 1.514801 0.5523822 -0.162292
500301 BB 0.9310601 0.9915419 1.111111 1 -0.04558641
500556 AB 0.8736695 0.6559246 1.068733 0.5105291 -0.1559584
500660 AA 0.5118521 0.02257722 1.13204 0.00 0.05211328
500694 AB 0.715772 0.3781628 1.25634 0.5087714 -0.2405285
500710 BB 0.7286785 0.8508129 1.592145 0.9269658 0.1303533
ABO_SNP1 BB 0.3991952 0.9861923 1.764417 1 0.1551627
DI_SNP1 BB 0.5118521 0.9872747 1.032038 1 -0.03531206
FY_SNP2 BB 0.4958491 0.9860678 0.9679124 1 0.1058924

Total number of rows: 1048713

Table truncated, full table size 61624 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap