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Sample GSM638388 Query DataSets for GSM638388
Status Public on Feb 15, 2011
Title MIZ6P18_38_610_1_1
Sample type genomic
 
Source name Undifferentiated hESC
Organism Homo sapiens
Characteristics cell type: HESC
passage number: 18
Extracted molecule genomic DNA
Extraction protocol Qiagen DNeasy Blood and Tissue Kit
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol Scanned on a BeadArray Reader (Illumina) using standard Illumina Protocol.
Description Genomic DNA extracted was genotyped using HumanOmni1-Quad BeadChip Genotyping BeadChips (Illumina).
Data processing We have used the Illumina Genome Studio software version 2010.2 to generate the SNP calls.
 
Submission date Dec 11, 2010
Last update date Feb 15, 2011
Contact name GULSAH ALTUN
E-mail(s) [email protected]
Phone (858) 784 7753
Fax (858) 784 7211
Organization name THE SCRIPPS RESEARCH INSTITUTE
Street address 3030 Science Park Rd. 3rd floor, room 3020
City SAN DIEGO
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL8882
Series (1)
GSE25925 Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ES and iPS Cells during Reprogramming and Time in Culture

Data table header descriptions
ID_REF
VALUE SNP calls
MIZ6P18_38_610_1_1.Score
MIZ6P18_38_610_1_1.Theta
MIZ6P18_38_610_1_1.R
MIZ6P18_38_610_1_1.B Allele Freq
MIZ6P18_38_610_1_1.Log R Ratio

Data table
ID_REF VALUE MIZ6P18_38_610_1_1.Score MIZ6P18_38_610_1_1.Theta MIZ6P18_38_610_1_1.R MIZ6P18_38_610_1_1.B Allele Freq MIZ6P18_38_610_1_1.Log R Ratio
200006 AB 0.8273118 0.4398857 2.588949 0.4956068 0.0913085
200052 BB 0.9487 0.9761606 0.7785726 0.9949203 -0.3306262
200053 AA 0.6644778 0.1257682 1.472616 0.05829296 -0.1427957
200070 AB 0.9347444 0.5707121 0.7330619 0.4839404 0.01458054
200078 BB 0.6884917 0.9745464 1.730613 1 -0.1647181
200087 AB 0.8084779 0.5548916 1.438278 0.5050243 -0.07045948
200096 AB 0.9041256 0.4434382 1.565514 0.4807199 0.00996031
200124 AA 0.877098 0.01338264 0.8642986 0.00 -0.09410284
200199 AB 0.9437442 0.4573947 1.291007 0.5034145 0.05810885
400630 AA 0.8781115 0.00 0.6493011 0.00 -0.1273828
401327 AB 0.8785409 0.5903157 1.199608 0.4843491 0.1777129
401753 BB 0.630483 0.9683681 1.106539 1 -0.2117206
500301 BB 0.9310601 0.9940932 1.111762 1 -0.0428293
500556 BB 0.8736695 0.9743229 1.061286 0.9955117 -0.07349967
500660 AA 0.5118521 0.01226616 1.094564 0.00 0.01080125
500694 AB 0.715772 0.3651192 1.591122 0.4960411 0.09153627
500710 BB 0.7286785 0.9702744 1.386229 1 0.007736668
ABO_SNP1 BB 0.3991952 0.9758845 1.693806 0.9993206 0.08468124
DI_SNP1 BB 0.5118521 0.9794081 1.033574 1 -0.03966171
FY_SNP2 BB 0.4958491 0.9759585 0.9211723 1 0.02726805

Total number of rows: 1048713

Table truncated, full table size 60947 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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