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Sample GSM638376 Query DataSets for GSM638376
Status Public on Feb 15, 2011
Title MIZ13P50_238_613_1_1
Sample type genomic
 
Source name Undifferentiated hESC
Organism Homo sapiens
Characteristics cell type: HESC
passage number: 50
Extracted molecule genomic DNA
Extraction protocol Qiagen DNeasy Blood and Tissue Kit
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol Scanned on a BeadArray Reader (Illumina) using standard Illumina Protocol.
Description Genomic DNA extracted was genotyped using HumanOmni1-Quad BeadChip Genotyping BeadChips (Illumina).
Data processing We have used the Illumina Genome Studio software version 2010.2 to generate the SNP calls.
 
Submission date Dec 11, 2010
Last update date Feb 15, 2011
Contact name GULSAH ALTUN
E-mail(s) [email protected]
Phone (858) 784 7753
Fax (858) 784 7211
Organization name THE SCRIPPS RESEARCH INSTITUTE
Street address 3030 Science Park Rd. 3rd floor, room 3020
City SAN DIEGO
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL8882
Series (1)
GSE25925 Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ES and iPS Cells during Reprogramming and Time in Culture

Data table header descriptions
ID_REF
VALUE SNP calls
MIZ13P50_238_613_1_1.Score
MIZ13P50_238_613_1_1.Theta
MIZ13P50_238_613_1_1.R
MIZ13P50_238_613_1_1.B Allele Freq
MIZ13P50_238_613_1_1.Log R Ratio

Data table
ID_REF VALUE MIZ13P50_238_613_1_1.Score MIZ13P50_238_613_1_1.Theta MIZ13P50_238_613_1_1.R MIZ13P50_238_613_1_1.B Allele Freq MIZ13P50_238_613_1_1.Log R Ratio
200006 AB 0.8273118 0.4602747 2.418147 0.5155017 0.003514996
200052 BB 0.9487 0.9856762 0.8926434 1 -0.1225166
200053 AA 0.6644778 0.1227943 1.464777 0.05385387 -0.1492339
200070 AB 0.9347444 0.6085327 0.6644579 0.5243485 -0.1337841
200078 AB 0.6884917 0.566557 2.416554 0.5326684 -0.1352672
200087 AA 0.8084779 0.07164274 0.9761341 0.01665242 -0.2964596
200096 AB 0.9041256 0.4798478 1.483405 0.5185472 -0.06120471
200124 AA 0.877098 0.007107034 0.8606741 0.00 -0.09531403
200199 AB 0.9437442 0.4439458 1.248383 0.4885627 0.01148491
400630 AA 0.8781115 0.00 0.6150321 0.00 -0.2056087
401327 AA 0.8785409 0.03339437 0.8443854 0.00 -0.01121002
401753 BB 0.630483 0.961286 1.175892 1 -0.1316808
500301 BB 0.9310601 0.9831364 1.189486 1 0.04646892
500556 BB 0.8736695 0.9822898 0.9598863 1 -0.2159845
500660 AA 0.5118521 0.02480931 1.058525 0.0003978492 -0.04632253
500694 AB 0.715772 0.3635646 1.807244 0.4935529 0.2755043
500710 AB 0.7286785 0.5397637 1.410419 0.5621777 -0.2280123
ABO_SNP1 BB 0.3991952 0.9725399 1.600742 0.9958079 -0.0005766011
DI_SNP1 BB 0.5118521 0.9809541 0.9572818 1 -0.1490131
FY_SNP2 BB 0.4958491 0.978997 0.985877 1 0.1273706

Total number of rows: 1048713

Table truncated, full table size 61117 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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