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Sample GSM638371 Query DataSets for GSM638371
Status Public on Feb 15, 2011
Title MEL2P13_36_131_4_1
Sample type genomic
 
Source name Undifferentiated hESC
Organism Homo sapiens
Characteristics cell type: HESC
passage number: 13
Extracted molecule genomic DNA
Extraction protocol Qiagen DNeasy Blood and Tissue Kit
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol Scanned on a BeadArray Reader (Illumina) using standard Illumina Protocol.
Description Genomic DNA extracted was genotyped using HumanOmni1-Quad BeadChip Genotyping BeadChips (Illumina).
Data processing We have used the Illumina Genome Studio software version 2010.2 to generate the SNP calls.
 
Submission date Dec 11, 2010
Last update date Feb 15, 2011
Contact name GULSAH ALTUN
E-mail(s) [email protected]
Phone (858) 784 7753
Fax (858) 784 7211
Organization name THE SCRIPPS RESEARCH INSTITUTE
Street address 3030 Science Park Rd. 3rd floor, room 3020
City SAN DIEGO
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL8882
Series (1)
GSE25925 Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ES and iPS Cells during Reprogramming and Time in Culture

Data table header descriptions
ID_REF
VALUE SNP calls
MEL2P13_36_131_4_1.Score
MEL2P13_36_131_4_1.Theta
MEL2P13_36_131_4_1.R
MEL2P13_36_131_4_1.B Allele Freq
MEL2P13_36_131_4_1.Log R Ratio

Data table
ID_REF VALUE MEL2P13_36_131_4_1.Score MEL2P13_36_131_4_1.Theta MEL2P13_36_131_4_1.R MEL2P13_36_131_4_1.B Allele Freq MEL2P13_36_131_4_1.Log R Ratio
200006 AB 0.8273118 0.4425836 2.74605 0.4989108 0.1747529
200052 BB 0.9487 0.9924083 0.8887441 1 -0.1211016
200053 AA 0.6644778 0.1196625 1.73893 0.0491792 0.09961508
200070 AA 0.9347444 0.008556101 0.4418777 0.00 -0.4122228
200078 BB 0.6884917 0.9706327 1.840654 0.9972095 -0.08086898
200087 BB 0.8084779 0.9684454 1.14425 1 -0.2226317
200096 BB 0.9041256 0.9881309 1.147886 1 0.05280135
200124 BB 0.877098 0.9883299 1.132976 1 0.1059541
200199 AB 0.9437442 0.4631903 1.176198 0.5088181 -0.07228053
400630 AA 0.8781115 0.004469874 0.6684477 0.00 -0.08989933
401327 AA 0.8785409 0.0183089 1.037474 0.00 0.2955501
401753 BB 0.630483 0.9753997 1.077958 1 -0.2418273
500301 AB 0.9310601 0.5225199 1.546329 0.489942 0.1301682
500556 AB 0.8736695 0.6161722 1.179425 0.4729004 0.006123842
500660 AA 0.5118521 0.02259585 1.267598 0.00 0.215272
500694 BB 0.715772 0.9738429 0.8942352 1 -0.09438796
500710 AB 0.7286785 0.4988903 1.665715 0.5142426 -0.01046283
ABO_SNP1 BB 0.3991952 0.9768108 1.710208 1 0.09961957
DI_SNP1 BB 0.5118521 0.9873919 1.158429 1 0.1314581
FY_SNP2 BB 0.4958491 0.9624204 0.8506105 0.9909927 -0.09731539

Total number of rows: 1048713

Table truncated, full table size 61419 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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