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Sample GSM638336 Query DataSets for GSM638336
Status Public on Feb 15, 2011
Title CM14P87_239_615_1_1
Sample type genomic
 
Source name Undifferentiated hESC
Organism Homo sapiens
Characteristics cell type: HESC
passage number: 87
Extracted molecule genomic DNA
Extraction protocol Qiagen DNeasy Blood and Tissue Kit
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol Scanned on a BeadArray Reader (Illumina) using standard Illumina Protocol.
Description Genomic DNA extracted was genotyped using HumanOmni1-Quad BeadChip Genotyping BeadChips (Illumina).
Data processing We have used the Illumina Genome Studio software version 2010.2 to generate the SNP calls.
 
Submission date Dec 11, 2010
Last update date Feb 15, 2011
Contact name GULSAH ALTUN
E-mail(s) [email protected]
Phone (858) 784 7753
Fax (858) 784 7211
Organization name THE SCRIPPS RESEARCH INSTITUTE
Street address 3030 Science Park Rd. 3rd floor, room 3020
City SAN DIEGO
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL8882
Series (1)
GSE25925 Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ES and iPS Cells during Reprogramming and Time in Culture

Data table header descriptions
ID_REF
VALUE SNP calls
CM14P87_239_615_1_1.Score
CM14P87_239_615_1_1.Theta
CM14P87_239_615_1_1.R
CM14P87_239_615_1_1.B Allele Freq
CM14P87_239_615_1_1.Log R Ratio

Data table
ID_REF VALUE CM14P87_239_615_1_1.Score CM14P87_239_615_1_1.Theta CM14P87_239_615_1_1.R CM14P87_239_615_1_1.B Allele Freq CM14P87_239_615_1_1.Log R Ratio
200006 BB 0.8273118 0.9921237 1.991678 1 0.1985051
200052 BB 0.9487 0.9996204 0.948237 1 -0.01929332
200053 AA 0.6389138 0.1344881 1.436492 0.07130858 -0.1823215
200070 BB 0.9347444 1 0.7013435 1 -0.008902144
200078 AA 0.6884917 0.09835676 1.642326 0.02791041 -0.1542274
200087 AA 0.8084779 0.05691057 0.9599616 0.001790666 -0.3089265
200096 BB 0.9041256 0.9898904 1.342858 1 0.2811211
200124 BB 0.877098 0.9873837 1.101427 1 0.06461779
200199 AA 0.9437442 0.01349149 1.111828 0.00 0.0483841
400630 AA 0.8781115 0.0002906818 0.606123 0.00 -0.2269493
401327 AA 0.8785409 0.04455149 0.8081428 0.00 -0.08160295
401753 AB 0.630483 0.5372624 1.531307 0.5506175 -0.1480103
500301 BB 0.9310601 0.9815224 1.154348 1 0.002007017
500556 BB 0.8736695 0.9806193 1.038272 1 -0.1032379
500660 AA 0.5118521 0.02033087 1.157506 0.00 0.0857851
500694 AB 0.715772 0.4102871 1.730003 0.5354282 0.2490489
500710 AB 0.7286785 0.5021887 1.639494 0.5181108 -0.03155433
ABO_SNP1 BB 0.3991952 0.9683394 1.563545 0.9913961 -0.03916832
DI_SNP1 BB 0.5118521 0.9739511 0.9337171 0.9995221 -0.1907334
FY_SNP2 BB 0.4958491 0.9794357 1.053848 1 0.2238714

Total number of rows: 1048713

Table truncated, full table size 61247 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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