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Sample GSM638332 Query DataSets for GSM638332
Status Public on Feb 15, 2011
Title BG02P46_54_215_1_4
Sample type genomic
 
Source name Undifferentiated hESC
Organism Homo sapiens
Characteristics cell type: HESC
passage number: 46
Extracted molecule genomic DNA
Extraction protocol Qiagen DNeasy Blood and Tissue Kit
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol Scanned on a BeadArray Reader (Illumina) using standard Illumina Protocol.
Description Genomic DNA extracted was genotyped using HumanOmni1-Quad BeadChip Genotyping BeadChips (Illumina).
Data processing We have used the Illumina Genome Studio software version 2010.2 to generate the SNP calls.
 
Submission date Dec 11, 2010
Last update date Feb 15, 2011
Contact name GULSAH ALTUN
E-mail(s) [email protected]
Phone (858) 784 7753
Fax (858) 784 7211
Organization name THE SCRIPPS RESEARCH INSTITUTE
Street address 3030 Science Park Rd. 3rd floor, room 3020
City SAN DIEGO
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL8882
Series (1)
GSE25925 Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ES and iPS Cells during Reprogramming and Time in Culture

Data table header descriptions
ID_REF
VALUE SNP calls
BG02P46_54_215_1_4.Score
BG02P46_54_215_1_4.Theta
BG02P46_54_215_1_4.R
BG02P46_54_215_1_4.B Allele Freq
BG02P46_54_215_1_4.Log R Ratio

Data table
ID_REF VALUE BG02P46_54_215_1_4.Score BG02P46_54_215_1_4.Theta BG02P46_54_215_1_4.R BG02P46_54_215_1_4.B Allele Freq BG02P46_54_215_1_4.Log R Ratio
200006 BB 0.8273118 0.9882727 1.631037 1 -0.09375574
200052 BB 0.9487 0.9943509 0.8506765 1 -0.1820204
200053 AA 0.6644778 0.1212735 1.480103 0.05158383 -0.1335722
200070 BB 0.9347444 0.9934825 0.6588075 1 -0.09996065
200078 AA 0.6884917 0.08180428 1.787393 0.01014202 -0.005841075
200087 AB 0.8084779 0.5908188 1.387961 0.5488816 -0.1072317
200096 AB 0.9041256 0.4372137 1.452012 0.4736743 -0.09530915
200124 BB 0.877098 0.9830542 1.126999 1 0.09501771
200199 AB 0.9437442 0.4473185 1.24074 0.4925041 0.001135327
400630 AA 0.8781115 0.002129613 0.6439655 0.00 -0.1414059
401327 AA 0.8785409 0.03898888 0.8749269 0.00 0.03648555
401753 BB 0.630483 0.9589111 1.142181 1 -0.1762046
500301 BB 0.9310601 0.9891304 1.312626 1 0.1930624
500556 AB 0.8736695 0.6577114 1.064683 0.5132507 -0.1609323
500660 AA 0.5118521 0.02235332 1.140995 0.00 0.06363816
500694 AB 0.715772 0.3659436 1.36662 0.4973608 -0.1280139
500710 AB 0.7286785 0.488333 1.873 0.5018614 0.1529992
ABO_SNP1 BB 0.3991952 0.9779323 1.589261 1 -0.004942294
DI_SNP1 BB 0.5118521 0.9798785 1.055346 1 -0.009199729
FY_SNP2 BB 0.4958491 0.9750136 0.9847387 1 0.1228651

Total number of rows: 1048713

Table truncated, full table size 61472 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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