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Sample GSM637526 Query DataSets for GSM637526
Status Public on Feb 21, 2012
Title Muscle_Old_Female_7.0
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics tissue: Vastus lateralis muscle
age: Old
gender: Female
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description GPL750
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Dec 08, 2010
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE25941 Effects of age on the skeletal muscle transcriptome

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 5619.8 P 4.42873e-05
AFFX-BioB-M_at 11220.4 P 4.42873e-05
AFFX-BioB-3_at 8675.92 P 4.42873e-05
AFFX-BioC-5_at 17918.8 P 4.42873e-05
AFFX-BioC-3_at 13701.8 P 4.42873e-05
AFFX-BioDn-5_at 34868.4 P 4.42873e-05
AFFX-BioDn-3_at 46965.4 P 4.42873e-05
AFFX-CreX-5_at 84393.9 P 5.16732e-05
AFFX-CreX-3_at 83111.9 P 4.42873e-05
AFFX-DapX-5_at 21.5801 A 0.425956
AFFX-DapX-M_at 4.55556 A 0.976071
AFFX-DapX-3_at 28.6895 A 0.814869
AFFX-LysX-5_at 54.9427 A 0.18511
AFFX-LysX-M_at 42.9298 A 0.354453
AFFX-LysX-3_at 2.24838 A 0.990663
AFFX-PheX-5_at 48.7597 A 0.156732
AFFX-PheX-M_at 9.56695 A 0.824672
AFFX-PheX-3_at 40.9142 A 0.544587
AFFX-ThrX-5_at 36.4681 A 0.772364
AFFX-ThrX-M_at 30.5867 A 0.262827

Total number of rows: 54675

Table truncated, full table size 1659 Kbytes.




Supplementary file Size Download File type/resource
GSM637526.CEL.gz 5.1 Mb (ftp)(http) CEL
GSM637526.CHP.gz 292.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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