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Sample GSM63665

Query DataSets for GSM63665

Status

Public on Dec 21, 2005

Title

DRG003_b

Sample type

RNA

Source name

dorsal root ganglion

Organism

Characteristics

BALB/c

Treatment protocol

normal standard housing conditions

Extracted molecule

total RNA

Extraction protocol

approximately 150 Laser Capture Microdissected neurons were collected in RLT buffer.

Label

biotin

Label protocol

Approximately 12 microgram of amplified RNA was processed to produce biotinylated cRNA targets.

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

Laser captured visceral sensory neurons.

Data processing

Affymetrix Microarray Suite version 5.0

Submission date

Jul 11, 2005

Last update date

Dec 21, 2005

Contact name

Pieter Johan Peeters

E-mail(s)

[email protected]

Organization name

J&J Pharmaceutical R&D

Department

Internal Medicine

Street address

Turnhoutseweg 30

City

Beerse

ZIP/Postal code

2340

Country

Belgium

Platform ID

Series (1)

Profiling of visceral sensory neurons in dorsal root and nodose ganglia in BALB/c mice.

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-YEL002c/WBP1_at	2.912708e+00	A	0.631562
AFFX-YEL018w/_at	9.269337e+00	A	0.724854
AFFX-YEL024w/RIP1_at	1.742287e+01	M	0.050229
AFFX-YEL021w/URA3_at	1.613539e+01	P	0.039661
AFFX-MUR_b2_at	2.939061e+02	P	0.000107
AFFX-MURINE_b1_at	6.482676e+02	P	0.000511
AFFX-MURINE_B2_at	7.772926e+03	P	0.000030
AFFX-b-ActinMur/M12481_5_at	8.488576e+01	A	0.195266
AFFX-b-ActinMur/M12481_M_at	3.840481e+02	P	0.000052
AFFX-b-ActinMur/M12481_3_at	4.229312e+03	P	0.000044
AFFX-GapdhMur/M32599_5_at	3.762453e+01	A	0.062929
AFFX-GapdhMur/M32599_M_at	6.299609e+02	P	0.000110
AFFX-GapdhMur/M32599_3_at	5.792366e+03	P	0.000044
AFFX-TransRecMur/X57349_5_at	2.587916e+00	A	0.783476
AFFX-TransRecMur/X57349_M_at	2.950572e+00	A	0.966323
AFFX-TransRecMur/X57349_3_at	2.291830e+01	P	0.020022
AFFX-PyruCarbMur/L09192_5_at	4.756534e+01	A	0.095667
AFFX-PyruCarbMur/L09192_MA_at	1.689191e+01	A	0.485110
AFFX-PyruCarbMur/L09192_MB_at	8.230420e+00	A	0.617401
AFFX-PyruCarbMur/L09192_3_at	2.295741e+02	P	0.000446

Total number of rows: 12488

Table truncated, full table size 414 Kbytes.

Supplementary data files not provided

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