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Sample GSM635 Query DataSets for GSM635
Status Public on Dec 17, 2001
Title Small Pre-BII cells 8
Sample type RNA
 
Source name Small Pre-BII cells
Organism Mus musculus
Extracted molecule total RNA
 
Description B220+CD25+sIg- Small Pre BII cells sorted out of mouse bone marrow, sort no. 8
 
Submission date Nov 27, 2001
Last update date Mar 17, 2006
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL75
Series (2)
GSE13 Murine bone marrow B cell precursors
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF Affymetrix probe set identifier
Experiment Name Experiment name
POSITIVE Number of positive probe pairs
NEGATIVE Number of negative probe pairs
PAIRS Number of probe set specific probe pairs on the array
PAIRS_USED Pairs used
PAIRS_IN_AVG Trimmed probe pair set
POS_FRACTION Positive/pairs used
Log Avg Log average
PM Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
POS/NEG Positive/negative
VALUE Average difference intensity
ABS_CALL Whether a probe set is present, marginal, or absent; see Affymetrix Literature

Data table
ID_REF Experiment Name POSITIVE NEGATIVE PAIRS PAIRS_USED PAIRS_IN_AVG POS_FRACTION Log Avg PM Excess MM Excess POS/NEG VALUE ABS_CALL
IL2_at RHMu8SmaA 4 5 19 19 19 0.21 0.11 0 0 0.8 -51 A
IL10_at RHMu8SmaA 6 5 20 20 18 0.3 1.06 1 0 1.2 194 A
GMCSF_at RHMu8SmaA 4 6 20 20 18 0.2 0.57 0 1 0.7 392 A
TNFRII_at RHMu8SmaA 3 4 20 20 19 0.15 0.57 0 0 0.8 139 A
MIP1-B_at RHMu8SmaA 4 4 20 20 18 0.2 0.22 0 0 1 630 A
IL4_at RHMu8SmaA 3 3 20 20 19 0.15 0.39 0 0 1 41 A
IL12_P40_at RHMu8SmaA 4 7 20 20 20 0.2 0.1 1 0 0.6 -360 A
TNFa_at RHMu8SmaA 4 6 20 20 19 0.2 0.16 0 0 0.7 -123 A
TCRa_at RHMu8SmaA 2 7 20 20 18 0.1 -1.07 0 0 0.3 -243 A
AFFX-BioB-5_at RHMu8SmaA 4 9 20 20 18 0.2 -1.04 0 0 0.4 -121 A
AFFX-BioB-M_at RHMu8SmaA 1 3 20 20 19 0.05 -0.53 0 0 0.3 -160 A
AFFX-BioB-3_at RHMu8SmaA 3 6 20 20 19 0.15 -0.89 0 0 0.5 -197 A
AFFX-BioC-5_at RHMu8SmaA 10 2 20 20 20 0.5 1.95 0 0 5 603 P
AFFX-BioC-3_at RHMu8SmaA 5 3 20 20 20 0.25 0.32 0 0 1.7 234 A
AFFX-BioDn-5_at RHMu8SmaA 11 2 20 20 19 0.55 2.08 0 0 5.5 364 P
AFFX-BioDn-3_at RHMu8SmaA 12 0 20 20 18 0.6 2.93 0 0 Undef 3358 P
AFFX-CreX-5_at RHMu8SmaA 20 0 20 20 19 1 7.04 2 0 Undef 6751 P
AFFX-CreX-3_at RHMu8SmaA 20 0 20 20 20 1 7.14 4 0 Undef 12561 P
AFFX-BioB-5_st RHMu8SmaA 5 3 20 20 20 0.25 0.53 0 0 1.7 297 A
AFFX-BioB-M_st RHMu8SmaA 5 6 20 20 17 0.25 0.44 1 0 0.8 -101 A

Total number of rows: 6584

Table truncated, full table size 384 Kbytes.




Supplementary data files not provided
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