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Sample GSM62867 Query DataSets for GSM62867
Status Public on Aug 23, 2005
Title ciprofibrate at 150 mg/kg/day for 15 days biological replicate 1
Sample type RNA
 
Source name animal 25
Organism Macaca fascicularis
Characteristics male liver
Extracted molecule total RNA
Extraction protocol Approximately 3 grams from the right lateral liver lobe was flash-frozen in liquid nitrogen. Total RNA isolated using TRIzol.
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description liver from animal 25, treated with 150 mg/kg/day ciprofibrate for 15 days
Data processing Affymetrix Microarray Suite version 5.0 given here for convenience. Note that data processing reported in the Toxicological Sciences manuscript was done using Rosetta Resolver and the Rosetta Resolver treated versus control group fold-change and p-value are appended to Series entry.
 
Submission date Jun 30, 2005
Last update date Mar 16, 2009
Contact name Neal F Cariello
E-mail(s) [email protected]
Phone 919 971 5307
Organization name GlaxoSmithKline
Department Safety Assessment
Lab Investigative Toxicology and Pathology
Street address 5 Moore Drive, Bldg 9, Rom 2011
City Research Triangle Park
State/province NC
ZIP/Postal code 27713
Country USA
 
Platform ID GPL8300
Series (1)
GSE2853 Ciprofibrate (PPAR-alpha agonist) in the monkey liver

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
34639_at 15.7 A 0.939581
40662_g_at 45.5 A 0.138765
1359_at 78.4 A 0.438361
38244_at 3.9 A 0.901946
38929_at 6.5 A 0.901946
32522_f_at 25.6 A 0.660442
34242_at 38.5 A 0.438361
38784_g_at 142.8 A 0.35869
40603_at 17.6 A 0.561639
35356_at 89.3 A 0.07383
33511_at 5.5 A 0.660442
39703_at 52.8 P 0.039365
36850_at 6.9 A 0.901946
35359_at 665.6 P 0.002228
36119_at 71.6 P 0.000959
387_at 206.5 A 0.060419
31514_at 99.6 A 0.378184
794_at 58.9 A 0.397994
34984_at 11.2 A 0.795978
708_at 14.9 A 0.901946

Total number of rows: 12625

Table truncated, full table size 309 Kbytes.




Supplementary file Size Download File type/resource
GSM62867.CEL.gz 2.8 Mb (ftp)(http) CEL

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