NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM62860 Query DataSets for GSM62860
Status Public on Aug 23, 2005
Title ciprofibrate at 3 mg/kg/day for 15 days biological replicate 2
Sample type RNA
 
Source name animal 33
Organism Macaca fascicularis
Characteristics male liver
Extracted molecule total RNA
Extraction protocol Approximately 3 grams from the right lateral liver lobe was flash-frozen in liquid nitrogen. Total RNA isolated using TRIzol.
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description liver from animal 33, treated with 3 mg/kg/day ciprofibrate for 15 days
Data processing Affymetrix Microarray Suite version 5.0 given here for convenience. Note that data processing reported in the Toxicological Sciences manuscript was done using Rosetta Resolver and the Rosetta Resolver treated versus control group fold-change and p-value are appended to Series entry.
 
Submission date Jun 30, 2005
Last update date Mar 16, 2009
Contact name Neal F Cariello
E-mail(s) [email protected]
Phone 919 971 5307
Organization name GlaxoSmithKline
Department Safety Assessment
Lab Investigative Toxicology and Pathology
Street address 5 Moore Drive, Bldg 9, Rom 2011
City Research Triangle Park
State/province NC
ZIP/Postal code 27713
Country USA
 
Platform ID GPL8300
Series (1)
GSE2853 Ciprofibrate (PPAR-alpha agonist) in the monkey liver

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
34639_at 24.2 A 0.92617
40662_g_at 27.8 A 0.418069
1359_at 13.1 A 0.67917
38244_at 10.8 A 0.67917
38929_at 13.6 A 0.872355
32522_f_at 114.5 A 0.64131
34242_at 76.1 A 0.284747
38784_g_at 99.1 A 0.458816
40603_at 9.5 A 0.697453
35356_at 51.9 A 0.561639
33511_at 131.4 A 0.098054
39703_at 31 A 0.267463
36850_at 16.7 A 0.660442
35359_at 597.9 P 0.006532
36119_at 73.6 M 0.05447
387_at 183.8 A 0.066865
31514_at 201.7 A 0.150527
794_at 61 A 0.35869
34984_at 5.9 A 0.94553
708_at 26.1 A 0.795978

Total number of rows: 12625

Table truncated, full table size 309 Kbytes.




Supplementary file Size Download File type/resource
GSM62860.CEL.gz 2.7 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap