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GEO accession:
Sample GSM62698
Query DataSets for GSM62698
Status
Public on Jun 30, 2005
Title
arf6/arf6 ARF8/arf8 flowers_stage 1-10
Sample type
RNA
Source name
flowers, stage 1-10
Organism
Arabidopsis thaliana
Characteristics
arf6/arf6 ARF8/arf8 flowers, stage 1-10
Treatment protocol
untreated
Growth protocol
Plants were grown under long day conditions for 6 weeks
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from frozen tissue using TRIzol reagent (Invitrogen)
Label
biotin
Label protocol
Approximately 7 µg of total RNA was processed to produce biotinylated cRNA targets.
Description
arf6/arf6 ARF8/arf8 flowers, stage 1-10
Data processing
Affymetrix GeneChip Microarray Suite version 5.0
Submission date
Jun 28, 2005
Last update date
Aug 28, 2018
Contact name
Christine Ellis
Organization name
University of North Carolina at Chapel Hill
Street address
121 Coker Hall
City
Chapel Hill
State/province
NC
ZIP/Postal code
27599-3280
Country
USA
Platform ID
GPL198
Series (1)
GSE2848
Auxin Response Factor mediated flower gene expression
Relations
Reanalyzed by
GSE118579
Reanalyzed by
GSE119083
Data table header descriptions
ID_REF
VALUE
raw signal level
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
386.3
P
0.001796
AFFX-BioB-M_at
362
P
0.00006
AFFX-BioB-3_at
310.3
P
0.000147
AFFX-BioC-5_at
734.9
P
0.00011
AFFX-BioC-3_at
401.3
P
0.00007
AFFX-BioDn-5_at
672.1
P
0.000044
AFFX-BioDn-3_at
2504.1
P
0.000052
AFFX-CreX-5_at
6618
P
0.000044
AFFX-CreX-3_at
10266.6
P
0.000044
AFFX-DapX-5_at
17.9
A
0.123572
AFFX-DapX-M_at
24.8
A
0.262827
AFFX-DapX-3_at
5.2
A
0.941556
AFFX-LysX-5_at
12.2
A
0.313723
AFFX-LysX-M_at
14.9
A
0.672921
AFFX-LysX-3_at
15.9
A
0.239063
AFFX-PheX-5_at
4.3
A
0.932322
AFFX-PheX-M_at
5.4
A
0.891021
AFFX-PheX-3_at
7.3
A
0.910522
AFFX-ThrX-5_at
1.8
A
0.932322
AFFX-ThrX-M_at
10.7
A
0.686277
Total number of rows:
22810
Table truncated, full table size
589 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM62698.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
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