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Sample GSM62337 Query DataSets for GSM62337
Status Public on Feb 21, 2006
Title HCC1195
Sample type genomic
 
Channel 1
Source name HCC1195 adenocarcinoma cell line
Organism Homo sapiens
Characteristics HCC1195 adenocarcinoma cell line
Extracted molecule genomic DNA
Label cy5
 
Channel 2
Source name normal male
Organism Homo sapiens
Characteristics NOVAGEN POOLED NORMAL MALE REFERENCE GENOMIC DNA
Extracted molecule genomic DNA
Label cy3
 
 
Description cy 5 = sample cy 3= reference
Data processing NONE
 
Submission date Jun 28, 2005
Last update date Feb 21, 2006
Contact name William Wallace Lockwood
E-mail(s) [email protected]
Organization name National Human Genome Research Institute
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2043
Series (1)
GSE2922 High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Median Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Median Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy3/Cy5
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy3/Cy5) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 13318.49 9768.73 1121.5 2445 12196.99 7323.73 281.1701 182.9588 0.7834421 1.276408 -0.3521014 0.3520899
2 9279.25 7639.51 1148 2450 8131.25 5189.51 273.7751 151.3914 0.737086 1.356683 -0.4400951 0.4400836
3 14877.63 8005.87 1004 2409 13873.63 5596.87 188.8608 127.4662 1.166089 0.8575606 0.2216779 -0.2216895
4 11237.48 8505.45 980 2392 10257.48 6113.45 347.981 206.577 0.7892975 1.266939 -0.341359 0.3413474
5 10961.27 7195.63 1002 2414 9959.27 4781.63 294.2862 146.3783 0.9798008 1.020607 -0.02943956 0.02942799
6 14834.35 7968.6 1022 2498 13812.35 5470.6 490.323 116.8057 1.187735 0.8419318 0.2482132 -0.2482248
7 15534.15 8271.83 1034 2490 14500.15 5781.83 481.89 127.1602 1.17976 0.847623 0.2384938 -0.2385054
8 11221.56 9604.43 1020 2503.5 10201.56 7100.93 343.464 157.0319 0.6758313 1.479647 -0.565265 0.5652534
9 9964.28 7294.3 1020 2498 8944.28 4796.3 347.828 111.6493 0.8772539 1.139912 -0.1889335 0.188922
10 10948.74 11446.1 1012 2472 9936.74 8974.1 365.562 183.1583 0.5208828 1.919802 -0.9409693 0.9409577
11 11276.93 9322.34 1013 2412.5 10263.93 6909.84 364.423 190.6792 0.6987674 1.43108 -0.5171158 0.5171043
12 12055.07 6646.1 1023.5 2425.5 11031.57 4220.6 340.905 108.2314 1.229562 0.8132913 0.2981443 -0.2981559
13 15581.91 12678.31 1022.5 2436.5 14559.41 10241.81 386.49 242.2942 0.6687348 1.495349 -0.5804938 0.5804822
14 11705.57 9258.51 1016 2422 10689.57 6836.51 252.5218 135.5604 0.7355507 1.359515 -0.4431033 0.4430918
15 14361.66 7659.56 1035 2415 13326.66 5244.56 335.294 138.28 1.19536 0.8365611 0.2574455 -0.257457
16 8258.78 6434.07 1025 2407 7233.78 4027.07 169.1707 129.5958 0.8450107 1.183408 -0.2429585 0.2429469
17 11923.02 6421.2 1036 2404 10887.02 4017.2 264.2106 138.1362 1.274891 0.7843747 0.3503735 -0.3503851
18 15816.77 8120.12 1015 2393 14801.77 5727.12 340.874 133.0357 1.215805 0.8224934 0.2819123 -0.2819239
19 9125.9 10642.05 1008 2406 8117.9 8236.05 205.8419 253.3499 0.4636728 2.156676 -1.108821 1.108809
20 13831.54 8192.21 1024 2403 12807.54 5789.21 309.9758 184.7416 1.040719 0.9608663 0.05758084 -0.0575924

Total number of rows: 104544

Table truncated, full table size 10957 Kbytes.




Supplementary data files not provided
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