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Sample GSM623 Query DataSets for GSM623
Status Public on Dec 17, 2001
Title Mature B cells 1_2
Sample type RNA
 
Source name Mature B cells
Organism Mus musculus
Extracted molecule total RNA
 
Description B220hi sIgM+ Mature B cells sorted out of mouse bone marrow, sort no. 1_2
 
Submission date Nov 27, 2001
Last update date Mar 17, 2006
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL75
Series (2)
GSE13 Murine bone marrow B cell precursors
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF Affymetrix probe set identifier
Experiment Name Experiment name
POSITIVE Number of positive probe pairs
NEGATIVE Number of negative probe pairs
PAIRS Number of probe set specific probe pairs on the array
PAIRS_USED Pairs used
PAIRS_IN_AVG Trimmed probe pair set
POS_FRACTION Positive/pairs used
Log Avg Log average
PM Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
POS/NEG Positive/negative
VALUE Average difference intensity
ABS_CALL Whether a probe set is present, marginal, or absent; see Affymetrix Literature

Data table
ID_REF Experiment Name POSITIVE NEGATIVE PAIRS PAIRS_USED PAIRS_IN_AVG POS_FRACTION Log Avg PM Excess MM Excess POS/NEG VALUE ABS_CALL
IL2_at RHMu11MatA 4 4 19 19 18 0.21 0.15 0 0 1 27 A
IL10_at RHMu11MatA 7 4 20 20 19 0.35 0.23 0 0 1.8 69 A
GMCSF_at RHMu11MatA 4 6 20 20 18 0.2 0.53 0 0 0.7 183 A
TNFRII_at RHMu11MatA 2 2 20 20 18 0.1 -0.25 0 0 1 6 A
MIP1-B_at RHMu11MatA 8 4 20 20 18 0.4 0.35 0 1 2 513 A
IL4_at RHMu11MatA 0 2 20 20 19 0 -0.11 0 0 0 -19 A
IL12_P40_at RHMu11MatA 1 5 20 20 20 0.05 -0.68 0 0 0.2 -248 A
TNFa_at RHMu11MatA 2 3 20 20 20 0.1 -0.03 0 0 0.7 -69 A
TCRa_at RHMu11MatA 2 4 20 20 18 0.1 -0.96 0 0 0.5 -376 A
AFFX-BioB-5_at RHMu11MatA 2 2 20 20 19 0.1 -0.04 0 0 1 -7 A
AFFX-BioB-M_at RHMu11MatA 1 2 20 20 19 0.05 -0.24 0 0 0.5 -61 A
AFFX-BioB-3_at RHMu11MatA 0 2 20 20 18 0 0.11 0 0 0 27 A
AFFX-BioC-5_at RHMu11MatA 4 1 20 20 19 0.2 0.69 0 0 4 226 A
AFFX-BioC-3_at RHMu11MatA 2 0 20 20 19 0.1 0.12 0 0 Undef 31 A
AFFX-BioDn-5_at RHMu11MatA 2 1 20 20 20 0.1 0.28 0 0 2 74 A
AFFX-BioDn-3_at RHMu11MatA 11 1 20 20 19 0.55 1.55 0 0 11 1893 P
AFFX-CreX-5_at RHMu11MatA 16 0 20 20 19 0.8 3.76 0 0 Undef 2945 P
AFFX-CreX-3_at RHMu11MatA 18 0 20 20 20 0.9 4.72 0 0 Undef 5710 P
AFFX-BioB-5_st RHMu11MatA 7 4 20 20 20 0.35 0.75 0 0 1.8 224 A
AFFX-BioB-M_st RHMu11MatA 5 3 20 20 17 0.25 1.05 0 0 1.7 124 A

Total number of rows: 6584

Table truncated, full table size 388 Kbytes.




Supplementary data files not provided
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