GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM60929
Query DataSets for GSM60929
Status
Public on Jun 14, 2005
Title
vMyb virus-infected replicate 2 (monocytes)
Sample type
RNA
Source name
Primary human monocytes
Organism
Homo sapiens
Characteristics
Monocytes from buffy coat preparation
Extracted molecule
total RNA
Extraction protocol
Approximately 1x10^6 cells were infected with adenovirus expressing v-Myb and GFP for 16 hours, then total RNA was isolated using RNEasy kit (Qiagen).
Label
biotin
Label protocol
Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Adenovirus-infected monocytes
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Jun 14, 2005
Last update date
Aug 28, 2018
Contact name
Scott A. Ness
E-mail(s)
[email protected]
Phone
505-272-9883
Organization name
U. of New Mexico HSC
Department
Internal Medicine
Lab
Ness
Street address
MSC07 4025 - CRF 121
City
Albuquerque
State/province
NM
ZIP/Postal code
87131-0001
Country
USA
Platform ID
GPL570
Series (1)
GSE2816
cMyb and vMyb in human monocytes
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
11395.6
P
0.000052
AFFX-BioB-M_at
21099.2
P
0.00007
AFFX-BioB-3_at
12654.2
P
0.000044
AFFX-BioC-5_at
25166.3
P
0.000044
AFFX-BioC-3_at
29660.8
P
0.000044
AFFX-BioDn-5_at
65562.1
P
0.000044
AFFX-BioDn-3_at
100074.3
P
0.000044
AFFX-CreX-5_at
321820.2
P
0.000044
AFFX-CreX-3_at
369713.4
P
0.000044
AFFX-DapX-5_at
25870.6
P
0.000044
AFFX-DapX-M_at
36057.9
P
0.000052
AFFX-DapX-3_at
49070.2
P
0.000044
AFFX-LysX-5_at
2065.7
P
0.000052
AFFX-LysX-M_at
3215.6
P
0.000754
AFFX-LysX-3_at
4993.6
P
0.000044
AFFX-PheX-5_at
4017
P
0.000044
AFFX-PheX-M_at
4995.6
P
0.000044
AFFX-PheX-3_at
5384.1
P
0.000052
AFFX-ThrX-5_at
7259.2
P
0.000044
AFFX-ThrX-M_at
8893.8
P
0.000044
Total number of rows:
54675
Table truncated, full table size
1455 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM60929.CEL.gz
7.1 Mb
(ftp)
(http)
CEL
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
