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GEO accession:
Sample GSM60928
Query DataSets for GSM60928
Status
Public on Jun 14, 2005
Title
vMyb virus-infected replicate 1 (monocytes)
Sample type
RNA
Source name
Primary human monocytes
Organism
Homo sapiens
Characteristics
Monocytes from buffy coat preparation
Extracted molecule
total RNA
Extraction protocol
Approximately 1x10^6 cells were infected with adenovirus expressing v-Myb and GFP for 16 hours, then total RNA was isolated using RNEasy kit (Qiagen).
Label
biotin
Label protocol
Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Adenovirus-infected monocytes
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Jun 14, 2005
Last update date
Aug 28, 2018
Contact name
Scott A. Ness
E-mail(s)
[email protected]
Phone
505-272-9883
Organization name
U. of New Mexico HSC
Department
Internal Medicine
Lab
Ness
Street address
MSC07 4025 - CRF 121
City
Albuquerque
State/province
NM
ZIP/Postal code
87131-0001
Country
USA
Platform ID
GPL570
Series (1)
GSE2816
cMyb and vMyb in human monocytes
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
9310.1
P
0.000225
AFFX-BioB-M_at
18258.6
P
0.000044
AFFX-BioB-3_at
11542.1
P
0.000044
AFFX-BioC-5_at
24743.1
P
0.000044
AFFX-BioC-3_at
29645.5
P
0.000044
AFFX-BioDn-5_at
59305.5
P
0.000044
AFFX-BioDn-3_at
101860.1
P
0.000044
AFFX-CreX-5_at
298180.9
P
0.000052
AFFX-CreX-3_at
336863
P
0.000044
AFFX-DapX-5_at
22900
P
0.000044
AFFX-DapX-M_at
29971.4
P
0.00007
AFFX-DapX-3_at
37494.3
P
0.000044
AFFX-LysX-5_at
1855.5
P
0.00007
AFFX-LysX-M_at
2993.8
P
0.004484
AFFX-LysX-3_at
4134.6
P
0.000127
AFFX-PheX-5_at
3179.3
P
0.00006
AFFX-PheX-M_at
4196.7
P
0.00007
AFFX-PheX-3_at
3890
P
0.00006
AFFX-ThrX-5_at
4815.6
P
0.00006
AFFX-ThrX-M_at
6580.7
P
0.000044
Total number of rows:
54675
Table truncated, full table size
1456 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM60928.CEL.gz
7.6 Mb
(ftp)
(http)
CEL
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