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| Status |
Public on Mar 30, 2023 |
| Title |
WT_CNCC_ChIP-seq_H3K4me3_rep2 |
| Sample type |
SRA |
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| Source name |
H9-derived CNCC
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| Organism |
Homo sapiens |
| Characteristics |
tissue: H9-derived CNCC
genotype: WT
differentiation day: d5
chip antibody: H3K4me3
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| Treatment protocol |
CNCC derivation as in Leung, A.W., Murdoch, B., Salem, A.F., Prasad, M.S., Gomez, G.A., and García-Castro, M.I. (2016). WNT/β-catenin signaling mediates human neural crest induction via a pre-neural border intermediate. Development 143, 398–410.
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| Growth protocol |
Cultured in Essential 8 media (Gibco, A1517001) on Matrigel substrate (Corning, 354277)
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
as in GSE137731
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
NextSeq 550 |
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| Description |
H3K4me3 ChIP-seq from WT H9-derived CNCCs
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| Data processing |
as in GSE137731
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| Submission date |
Mar 10, 2022 |
| Last update date |
Mar 30, 2023 |
| Contact name |
Justin Cotney |
| Organization name |
UConn Health
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| Department |
Genetics and Genome Sciences
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| Street address |
400 Farmington Avenue
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| City |
Farmington |
| State/province |
CT |
| ZIP/Postal code |
06030-6403 |
| Country |
USA |
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| Platform ID |
GPL21697 |
| Series (1) |
| GSE198297 |
Chromatin state and chromatin architecture in mouse embryonic craniofacial tissue, neural crest cell culture model and human primary craniofacial tissue |
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| Relations |
| BioSample |
SAMN26559511 |
| SRA |
SRX14427362 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM5944464_JVAN044_NC_H3K4me3_R2.pval.signal.bigWig |
411.5 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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