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Sample GSM5796 Query DataSets for GSM5796
Status Public on Apr 09, 2003
Title Spleen vs TGF-beta Treated B cell 120min (set2)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name TGF-beta (transforming growth factor-beta) Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with TGF-beta (transforming growth factor-beta) for 120min
 
Submission date Apr 08, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE400 Spleen vs TGF-beta (transforming growth factor-beta) Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.192607 44564.5 28601 65516.7 42545.6 65517 40411 0.689481 13075.4 773.286 952.099 774 945 45.7425 66.8593 0
2 -0.0319472 375.786 349.135 1219.31 1445.19 1236.5 1463.5 85.1736 153.973 773.879 914.242 774 918 48.5643 75.848 0
3 0 103.492 26.092 765.885 899.731 762.5 901 47.1723 69.4945 824.647 946.333 815 941.5 74.0684 77.1623 0
4 -0.0809049 156.589 129.974 941.423 1106.15 941.5 1111 36.008 72.0143 783.426 930.149 780.5 926 48.0575 53.5431 0
5 0 43.6163 32.8976 762.28 922.36 763 923 24.5451 48.9506 770.987 925.427 762 915 43.6588 69.5605 0
6 0.0306988 885.249 950.089 1918.5 2358.58 1948 2380 187.219 283.466 762.511 910.66 757 911 43.4034 61.2452 0
7 -0.19811 76.047 48.1917 825.393 958.321 831 968.5 64.8767 80.1259 768.364 922.781 760 906 48.522 77.7195 0
8 0 38.9771 35.1716 768.037 918.963 763 937 58.4449 96.461 761.487 909.571 757 903.5 40.7033 71.2843 0
9 0.0105599 52.2017 53.4866 791.074 943.148 791 933 37.0124 71.9384 761.287 896.176 754.5 890.5 43.6781 67.4365 0
10 0.271629 390.26 729.429 1254.17 2044.88 1229.5 1797 162.518 636.679 770.844 921.557 771 928.5 42.213 77.077 0
11 0 43.1178 30.4217 745.957 914.043 748 898 26.5492 49.2964 766.161 923.581 764 919.5 40.7218 68.1765 0
12 0.0207641 39.7944 41.7432 757.32 925.72 761 941 36.7692 74.2667 754.444 897.974 754 891 41.8398 75.9835 0
13 0 45.1368 39.1305 761.24 900.88 753 882 49.6784 65.3837 762.449 906.937 757 898 45.8542 81.5247 0
14 0.329749 1047.46 2238.13 2181.75 4339.93 2358 4878.5 561.592 1357.98 778.474 928.128 776 918 43.3501 66.8872 1.095402467
15 0.107135 3814.88 4882.2 6373.46 7848.65 7262 8811.5 4332.74 5514.28 767.37 907.532 765 908 42.804 69.1818 0
16 0.281183 1823.54 3484.16 3344.36 6056.11 3731 6822 778.553 1609.82 777.012 929.957 773 932 44.456 75.5259 0.934069708
17 -0.374815 1329.06 560.697 2525.88 1771.42 1440.5 1291 1703.1 849.562 779.916 938.325 773 931.5 42.3212 68.3237 0
18 0.0826386 890.447 1077.08 1940.75 2581.08 1979.5 2651 212.156 266.675 775.353 935.627 769 936 41.469 80.298 0.274519487
19 0.469936 3720.93 10979.6 6311.61 16393.2 6474.5 16876 791.184 2115.96 772.188 916.719 767.5 919 42.5319 67.9631 1.561093601
20 0.051412 5172.25 5822.26 8451.07 9139.5 8341 9077 609.371 560.881 773.063 924.082 768 924 38.5818 61.733 0.170786967

Total number of rows: 16273

Table truncated, full table size 1957 Kbytes.




Supplementary data files not provided
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