|
| Status |
Public on Aug 01, 2011 |
| Title |
Arabidopsis VND7XVE Control 2 |
| Sample type |
RNA |
| |
|
| Source name |
Arabidopsis protoplasts
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
genotype/variation: vnd7xve
treatment group: cycloheximide
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated using the QIAGEN Plant RNA isolation kit.
|
| Label |
Biotin
|
| Label protocol |
Affymetrix One-Cycle Eukaryotic Target Labeling kit.
|
| |
|
| Hybridization protocol |
Standard Affymetrix GeneChip Technology.
|
| Scan protocol |
GeneChips were scanned using the GeneArray Scanner 3000.
|
| Data processing |
Expression values are calculated based on the difference of the PM signal and MM signal at each of the probe pairs using the Affymetrix GeneChip Operating System (GCOS). This software employs statistical algorithms to calculate qualitative and quantitative expression values for each transcript. It also generates a statistical p-value, which suggests the level of confidence in each of the qualitative measurements.
|
| |
|
| Submission date |
Aug 10, 2010 |
| Last update date |
Aug 01, 2011 |
| Contact name |
Zheng-Hua Ye |
| Organization name |
University of Georgia
|
| Department |
Plant Biology
|
| Street address |
2502 Miller Plant Sciences
|
| City |
Athens |
| State/province |
GA |
| ZIP/Postal code |
30602 |
| Country |
USA |
| |
|
| Platform ID |
GPL198 |
| Series (1) |
| GSE23555 |
Identification of Direct Targets of SND1 and VND7 |
|
