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Sample GSM5640 Query DataSets for GSM5640
Status Public on Apr 05, 2003
Title Spleen vs IL4 Treated B cell 240min (set1)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name IL4 Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with IL4 for 240min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE386 Spleen vs IL4 Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.635492 48095.9 11133.1 62952 16518.4 64879 15936 3293.73 3911.59 818.553 832.697 813.5 827 41.9564 57.0797 0
2 0.0900809 503.845 619.98 1467.29 1602.1 1492 1592 88.2021 130.844 812.953 821.027 802.5 810.5 50.5583 68.8065 0
3 0 63.4528 40.6134 804.692 833.154 806.5 824.5 43.3191 69.8837 820.401 829.389 796 819 67.6398 69.6031 0
4 -0.117855 149.137 113.692 936.04 914.08 937 919 46.8761 63.5321 787.432 792.865 785 790 33.0735 47.9598 0
5 -0.0206769 36.8441 35.131 802.393 792.679 795.5 778.5 39.1808 55.9113 794.426 799.716 791.5 799.5 34.4026 58.5313 0
6 0.0800072 913.2 1097.93 2021.04 2215.07 2083 2290.5 232.448 305.459 803.191 799.936 799 799 38.5808 53.5269 0
7 0.0134221 29.4959 30.4217 777.462 783.423 758.5 775 52.1607 59.2217 779.592 782.375 779 779 32.185 49.6391 0
8 0.0876116 34.8205 42.6036 775.625 778.542 772 760 27.1787 45.2135 769.152 758.768 767 757.5 31.8569 42.9414 0
9 0.164104 6403.35 9343.54 9299.4 13484 9342 13491 766.659 1259.34 772.421 764.023 771 761 31.8767 41.4384 0.545141688
10 0.595308 407.061 1603.13 1293.91 2838.3 1272 2729 132.314 603.165 767.819 753.697 767 750 32.1465 46.0054 1.97757037
11 0 33.7605 32.2541 779.76 756.2 774 748 33.2419 36.2813 778.117 777.182 773 772.5 36.1337 55.0544 0
12 0.105369 47.7622 60.877 794.958 817.917 785 821.5 45.6494 64.9387 772.562 770.922 772 763 33.6936 54.143 0
13 0 35.2214 28.9389 758.652 750.696 757 744 28.1306 37.8159 774.712 756.744 771 751.5 37.1836 50.0781 0
14 0.22273 1286.74 2148.92 2509.46 3593.04 2351.5 3306 1297.95 2038.38 779.561 776.554 774.5 775 35.3352 50.4318 0
15 0.181761 4083.85 6206.28 6317.93 9061.5 6428 9329.5 3903.23 5670.85 785.719 790.405 783 791 33.0071 54.2804 0
16 0.64195 1708.72 7492.42 3116.36 10652.7 3319.5 10627 765.82 2709.51 790.205 786.218 786 778.5 40.3148 59.6883 2.132511741
17 -0.37631 1438.35 604.723 2731.16 1558.92 1738 1192 1936.44 710.954 793.397 802.269 789 793 44.2412 62.4538 0
18 0.0167347 1188.37 1235.05 2378.56 2387.6 2380 2343 182.093 173.971 785.297 788.155 781 779 36.6566 61.2131 0.05559147
19 0.342744 6674.44 14694.6 9577.69 20991.8 9572.5 21532 1037.69 2683.27 769.811 773.372 767 767 32.8585 45.8341 1.138570923
20 -0.0069987 6081.93 5984.71 8947.04 8797.38 8895.5 8737 759.659 839.159 762.706 754.542 759 747 31.5701 45.2272 -0.023249178

Total number of rows: 16273

Table truncated, full table size 1952 Kbytes.




Supplementary data files not provided
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