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Status
Public on Jun 24, 2010
Title
Patient 22, IDC
Sample type
RNA
Source name
Breast, IDC
Organism
Homo sapiens Characteristics
tissue: breast cancer
Treatment protocol
N/A.
Growth protocol
N/A.
Extracted molecule
total RNA
Extraction protocol
Tissues microdissected for 80% tumor, total RNA extracted with TRIzol, quality assessed on Bioanalyzer.
Label
biotin
Label protocol
cDNA was made from RNA using Superscript. First strand was synthesized by 3' dt24 primer, followed by IVT and labelling with biotinylated 11-CTP and 16 UTP.
Hybridization protocol
16 hours in Affymetrix hyb oven.
Scan protocol
Scanned on an Affymetrix 7G-Plus scanner.
Description
17118-1P_exp
Data processing
GC-RMA Partek 6.0.
Submission date
Jun 23, 2010
Last update date
Jun 23, 2010
Contact name
Lesleyann Hawthorn
E-mail(s)
[email protected] Phone
7067214384
Fax
7067211660
Organization name
Medical College of Georgia Cancer Center
Department
Molecular Oncology
Street address
1120 15th St
City
Augusta
State/province
GA
ZIP/Postal code
30912
Country
USA
Platform ID
GPL570 Series (2)
GSE22544 Integration of transcript expression, copy number and LOH analysis of infiltrating ductal carcinoma of the breast: expression analysis
GSE22840 Integration of transcript expression, copy number and LOH analysis of infiltrating ductal carcinoma of the breast
Data table header descriptions ID_REF VALUE GC-RMA-normalized intensity value
Data table ID_REF VALUE 1007_s_at
8.63518
1053_at
4.74749
117_at
4.07769
121_at
6.71916
1255_g_at
2.51772
1294_at
7.86277
1316_at
5.38753
1320_at
3.29887
1405_i_at
6.61542
1431_at
2.70805
1438_at
2.57137
1487_at
5.63925
1494_f_at
3.94968
1552256_a_at
7.60755
1552257_a_at
6.53555
1552258_at
4.07737
1552261_at
2.63684
1552263_at
4.478
1552264_a_at
4.63872
1552266_at
3.74434
54675 998 Kbytes .Supplementary file Size Download File type/resource GSM559631.CEL.gz
4.6 Mb
(ftp) (http) CEL
Processed data included within Sample table
