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Sample GSM559015 Query DataSets for GSM559015
Status Public on Jun 30, 2010
Title Dmrt1 KO DHH-cre 19840202_532
Sample type RNA
 
Source name P9 testes
Organism Mus musculus
Characteristics tissue: juvenile testes
cre: Cre-positive
genotype: DHH-cre
age: P9
sex: Male
genotype: Dmrt1 KO
Extracted molecule total RNA
Extraction protocol RNA was isolated from P9 testes using TRIzolTM reagent (Life Technologies), further purified with the RNeasy minelute cleanup kit (Qiagen 74204), and RNA quality was verified with a 2100 Bioanalyzer (Agilent Technologies).
Label Cy3
Label protocol Standard Nimble protocol: RNA was reverse transcribed and hybridized to an MM8_60mer_expr array (NimbleGen A4543-00-01)
 
Hybridization protocol standard Nimblegen protocol
Scan protocol standard Nimblegen protocol
Data processing RMA
 
Submission date Jun 22, 2010
Last update date Jun 22, 2010
Contact name Aaron Sarver
Organization name University of Minnesota
Department Masonic Cancer Center
Lab Biostatistics and Informatics
Street address 425 East River Road
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platform ID GPL10572
Series (2)
GSE22508 Conditional Dmrt1 knockout gene expression (phase 8)
GSE22510 Conditional Dmrt1 knockout gene expression

Data table header descriptions
ID_REF
VALUE RMA Normalized signal intensity

Data table
ID_REF VALUE
NM_001001130 2433.222
NM_001001144 7041.3766
NM_001001152 476.551
NM_001001160 5565.3924
NM_001001176 9023.1266
NM_001001177 880.9656
NM_001001179 672.3986
NM_001001180 539.0084
NM_001001181 10041.3766
NM_001001182 2181.741
NM_001001183 1876.6266
NM_001001184 4887.1266
NM_001001186 308.4115
NM_001001187 177.0489
NM_001001295 3171.6808
NM_001001297 621.7205
NM_001001303 41126.2966
NM_001001309 218.7024
NM_001001318 315.4028
NM_001001319 65.6441

Total number of rows: 25631

Table truncated, full table size 493 Kbytes.




Supplementary file Size Download File type/resource
GSM559015.pair.gz 1.2 Mb (ftp)(http) PAIR
Processed data included within Sample table

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