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Sample GSM559010 Query DataSets for GSM559010
Status Public on Jun 30, 2010
Title Dmrt1 KO NGN-cre 12505002_532
Sample type RNA
 
Source name P9 testes
Organism Mus musculus
Characteristics tissue: juvenile testes
cre: Cre-positive
genotype: NGN-cre
age: P9
sex: Male
genotype: Dmrt1 KO
Extracted molecule total RNA
Extraction protocol RNA was isolated from P9 testes using TRIzolTM reagent (Life Technologies), further purified with the RNeasy minelute cleanup kit (Qiagen 74204), and RNA quality was verified with a 2100 Bioanalyzer (Agilent Technologies).
Label Cy3
Label protocol Standard Nimble protocol: RNA was reverse transcribed and hybridized to an MM8_60mer_expr array (NimbleGen A4543-00-01)
 
Hybridization protocol standard Nimblegen protocol
Scan protocol standard Nimblegen protocol
Data processing RMA
 
Submission date Jun 22, 2010
Last update date Jun 22, 2010
Contact name Aaron Sarver
Organization name University of Minnesota
Department Masonic Cancer Center
Lab Biostatistics and Informatics
Street address 425 East River Road
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platform ID GPL10572
Series (2)
GSE22507 Conditional Dmrt1 knockout gene expression (phase 7)
GSE22510 Conditional Dmrt1 knockout gene expression

Data table header descriptions
ID_REF
VALUE RMA Normalized signal intensity

Data table
ID_REF VALUE
NM_001001130 1273.1833
NM_001001144 6345.9448
NM_001001152 224.597
NM_001001160 3664.4045
NM_001001176 10980.6892
NM_001001177 2376.8895
NM_001001179 111.1759
NM_001001180 417.6945
NM_001001181 9600.6408
NM_001001182 3664.3768
NM_001001183 2272.3517
NM_001001184 5744.9618
NM_001001186 274.1554
NM_001001187 62.4696
NM_001001295 2748.9141
NM_001001297 590.3444
NM_001001303 54074.9458
NM_001001309 469.7488
NM_001001318 104.3033
NM_001001319 32.6341

Total number of rows: 25631

Table truncated, full table size 488 Kbytes.




Supplementary file Size Download File type/resource
GSM559010_12505002_532.pair.gz 1.2 Mb (ftp)(http) PAIR
Processed data included within Sample table

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