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Sample GSM559007 Query DataSets for GSM559007
Status Public on Jun 30, 2010
Title Dmrt1 KO NGN-cre 12504702_532
Sample type RNA
 
Source name P9 testes
Organism Mus musculus
Characteristics tissue: juvenile testes
cre: Cre-positive
genotype: NGN-cre
age: P9
sex: Male
genotype: Dmrt1 KO
Extracted molecule total RNA
Extraction protocol RNA was isolated from P9 testes using TRIzolTM reagent (Life Technologies), further purified with the RNeasy minelute cleanup kit (Qiagen 74204), and RNA quality was verified with a 2100 Bioanalyzer (Agilent Technologies).
Label Cy3
Label protocol Standard Nimble protocol: RNA was reverse transcribed and hybridized to an MM8_60mer_expr array (NimbleGen A4543-00-01)
 
Hybridization protocol standard Nimblegen protocol
Scan protocol standard Nimblegen protocol
Data processing RMA
 
Submission date Jun 22, 2010
Last update date Jun 22, 2010
Contact name Aaron Sarver
Organization name University of Minnesota
Department Masonic Cancer Center
Lab Biostatistics and Informatics
Street address 425 East River Road
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platform ID GPL10572
Series (2)
GSE22507 Conditional Dmrt1 knockout gene expression (phase 7)
GSE22510 Conditional Dmrt1 knockout gene expression

Data table header descriptions
ID_REF
VALUE RMA Normalized signal intensity

Data table
ID_REF VALUE
NM_001001130 1450.3917
NM_001001144 7421.3571
NM_001001152 113.391
NM_001001160 4017.4947
NM_001001176 11754.8628
NM_001001177 3567.3345
NM_001001179 167.1443
NM_001001180 277.3775
NM_001001181 7181.8586
NM_001001182 3337.9326
NM_001001183 1807.0295
NM_001001184 5083.7453
NM_001001186 301.6836
NM_001001187 44.3459
NM_001001295 3195.7378
NM_001001297 668.8633
NM_001001303 59763.6942
NM_001001309 403.0433
NM_001001318 97.9929
NM_001001319 25.2433

Total number of rows: 25631

Table truncated, full table size 488 Kbytes.




Supplementary file Size Download File type/resource
GSM559007_12504702_532.pair.gz 1.2 Mb (ftp)(http) PAIR
Processed data included within Sample table

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