NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM558973 Query DataSets for GSM558973
Status Public on Jun 30, 2010
Title Dmrt1 KO NGN-cre 29481302_532
Sample type RNA
 
Source name P9 testes
Organism Mus musculus
Characteristics tissue: juvenile testes
cre: Cre-positive
genotype: NGN-cre
age: P9
sex: Male
genotype: Dmrt1 KO
Extracted molecule total RNA
Extraction protocol RNA was isolated from P9 testes using TRIzolTM reagent (Life Technologies), further purified with the RNeasy minelute cleanup kit (Qiagen 74204), and RNA quality was verified with a 2100 Bioanalyzer (Agilent Technologies).
Label Cy3
Label protocol Standard Nimble protocol: RNA was reverse transcribed and hybridized to an MM8_60mer_expr array (NimbleGen A4543-00-01)
 
Hybridization protocol standard Nimblegen protocol
Scan protocol standard Nimblegen protocol
Data processing RMA
 
Submission date Jun 22, 2010
Last update date Jun 22, 2010
Contact name Aaron Sarver
Organization name University of Minnesota
Department Masonic Cancer Center
Lab Biostatistics and Informatics
Street address 425 East River Road
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platform ID GPL10572
Series (2)
GSE22500 Conditional Dmrt1 knockout gene expression (phase 6)
GSE22510 Conditional Dmrt1 knockout gene expression

Data table header descriptions
ID_REF
VALUE RMA Normalized signal intensity

Data table
ID_REF VALUE
NM_001001130 1103.4375
NM_001001144 3421.4375
NM_001001152 354.6875
NM_001001160 3443.2038
NM_001001176 16181.1421
NM_001001177 474.2632
NM_001001179 358.3125
NM_001001180 536.9303
NM_001001181 8644.5625
NM_001001182 4045.5625
NM_001001183 1271.6875
NM_001001184 5160.028
NM_001001186 363.9192
NM_001001187 189.1879
NM_001001295 1242.9375
NM_001001297 964.0625
NM_001001303 52262.0625
NM_001001309 355.3125
NM_001001318 78.0346
NM_001001319 20.4309

Total number of rows: 25631

Table truncated, full table size 486 Kbytes.




Supplementary file Size Download File type/resource
GSM558973_29481302_532.pair.gz 1.2 Mb (ftp)(http) PAIR
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap