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Sample GSM5522 Query DataSets for GSM5522
Status Public on Apr 05, 2003
Title Spleen vs CpG-oligodeoxynucleotide Treated B cell 30min (set3)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name CpG-oligodeoxynucleotide Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with CpG-oligodeoxynucleotide for 30min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE378 Spleen vs CpG-oligodeoxynucleotide Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -1.09302 34056.4 2749.04 60323.7 3629.15 63657 3221.5 6283.75 1530.74 1486.15 924.055 1488 921 43.5576 54.1036 0
2 -0.169069 237.808 161.123 1787.73 1132.12 1800 1131.5 132.323 80.706 1485.59 978.191 1483 985 40.7069 61.3925 0
3 0 49.9007 46.5088 1447.39 1112.93 1442.5 1102.5 55.3175 87.2892 1470.62 1079.28 1467.5 1062 48.8077 82.2028 0
4 -0.440444 123.78 44.8959 1562.44 956.963 1570 964 60.4434 35.4872 1466.72 991.063 1466 990 51.6073 75.094 0
5 0 42.4195 37.3604 1411.27 910.615 1403.5 901 41.8861 63.3455 1433.62 888.385 1433 888 41.2471 38.3158 0
6 -0.146356 528.47 377.281 2205.68 1272.54 2241 1286 160.996 103.145 1425.06 892.675 1426 889 47.854 45.0614 0
7 0 59.8808 17.1478 1394.96 848.87 1400 848 26.5167 36.8983 1423.9 885.836 1419.5 885.5 43.6142 40.7006 0
8 0 39.5203 28.2606 1410.16 906.08 1415 899 53.4156 46.6315 1409.41 903.732 1408 905.5 41.4866 45.0568 0
9 -0.127375 2945.32 2196.64 6156.38 3203.23 6114 3192 335.429 173.912 1413.96 904.898 1413 905 31.9672 41.8128 -0.423130591
10 0 46.3847 32.334 1410 886.5 1411 891 39.5606 46.5366 1427 901.317 1422 894 43.5951 59.4744 0
11 0 390.942 63.8849 1423.27 880.692 1415.5 880 34.0442 29.6118 1533.55 994.191 1433 918 228.42 189.021 0
12 -0.172643 44.3146 29.7786 1427.13 889.174 1428 888 38.8146 23.8264 1411.12 886.051 1410.5 885 36.9151 44.461 0
13 0 45.4864 24.2965 1395.15 868.926 1385 865 51.3575 35.9753 1408.24 872.739 1407 874 44.886 42.5645 0
14 -0.00619851 644.552 635.418 2383.23 1521.92 2209 1408 710.6 510.501 1400.19 868.721 1398 871.5 40.1757 44.6585 0
15 0.137725 2645.55 3632.79 5700.5 4630.58 5398 3885.5 3187.72 2926.8 1385.42 852.934 1386 852 41.2521 47.0525 0
16 0.0119596 1295.71 1331.89 3395.61 2259.14 3516.5 2245.5 673.389 394.082 1405.43 828.15 1403 825 41.0471 35.6946 0.039728931
17 -0.560638 542.315 149.147 2161.95 958.524 2043 939 345.83 71.4469 1401.36 826.342 1399 828 42.1053 37.6759 -1.862399123
18 -0.015557 584.058 563.506 2276.41 1403.48 2285 1347 462.49 310.312 1391.78 827.096 1389 826.5 42.7367 40.9693 0
19 0.36836 2525.11 5897.13 5548.63 6920.67 5630.5 7184.5 777.129 1034.49 1382.23 833.617 1383 836 39.9643 38.2509 1.223665433
20 -0.300844 4660.56 2331.28 9050.04 3233.61 9305.5 3303.5 1763.06 512.674 1395.52 834.228 1393 833 38.8248 45.8167 -0.999382136

Total number of rows: 16273

Table truncated, full table size 1987 Kbytes.




Supplementary data files not provided
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