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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 26, 2022 |
| Title |
control_t1_25_3 |
| Sample type |
SRA |
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| Source name |
control_t1_25_3
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| Organism |
Brassica napus |
| Characteristics |
treatment: control_t1_25
genotype: wild type (Trezzor)
developmental stage: planting-date=05-JUN-19,harvest-date=10-JUL-19
tissue: leaf
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| Treatment protocol |
no treatment
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| Growth protocol |
Controled conditions (greenhouse) Media: PremierTech sandy compost Hygrometry: 80% field capacity (Fc) Temperature: 25°C day / 20°C night Light: 500 µmol.m².s-1
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| Extracted molecule |
total RNA |
| Extraction protocol |
control_t1_25_3(200mg)
rna_selection:selection polyA, paired-end, stranded:yes, Protocol:truseq-stranded-mrna-sample-prep-guide-15031047-E.pdf
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
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| Data processing |
Genome_build: genome of Brassica napus
genome mapping and counts of reads by gene locus are done with STAR; exact multihits are removed and count only consistent PE reads (in PE case).
Supplementary_files_format_and_content: type:count file (txt); content:GeneID,counts_noStranded,counts_forwardStrand,counts_reverseStrand
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| Submission date |
Jun 28, 2021 |
| Last update date |
Jan 26, 2022 |
| Contact name |
Véronique BRUNAUD |
| E-mail(s) |
[email protected]
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| Organization name |
INRAE - CNRS - UPSUD
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| Lab |
IPS2
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| Street address |
rue Noetzlin
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| City |
Gif-sur-Yvette |
| ZIP/Postal code |
91190 |
| Country |
France |
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| Platform ID |
GPL25850 |
| Series (1) |
| GSE179022 |
eauptic one-Effet of water shortage on the whole foliar elemental content (ie. Ionome) |
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| Relations |
| SRA |
SRX11242992 |
| BioSample |
SAMN19945823 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM5403806_STARcount_control_t1_25_3.txt.gz |
494.0 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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