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Sample GSM5394 Query DataSets for GSM5394
Status Public on Apr 02, 2003
Title S56-PN1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S56-PN1
mAdb experiment ID: 25494
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.0025983 1 1 1 2051 476 302 122 2635 358 1010 177 0 1.006 0.0025983
159763 -0.0083313 2 1 1 2274 455 279 117 2803 369 902 170 0 0.981 -0.0083313
159764 0.3012473 3 1 1 5078 1186 278 111 3186 797 943 170 0 2.001 0.3012473
159765 0.5002363 4 1 1 2303 535 310 114 1721 326 1132 184 0 3.164 0.5002363
159766 0.0511533 1 2 1 841 258 303 119 1475 246 1028 174 0 1.125 0.0511533
159767 0.3579353 2 2 1 2097 555 268 117 1631 260 881 168 0 2.280 0.3579353
159768 0.1550323 3 2 1 1880 495 280 109 1995 381 948 167 0 1.429 0.1550323
159769 0.0476643 4 2 1 2021 606 334 125 2592 440 1179 191 0 1.116 0.0476643
159770 -0.0347983 1 3 1 1019 352 312 126 1745 378 1029 181 0 0.923 -0.0347983
159771 0.2828493 2 3 1 1883 525 273 105 1640 350 855 161 0 1.918 0.2828493
159772 -0.2831623 3 3 1 790 511 284 108 1866 4059 958 163 0 0.521 -0.2831623
159773 -0.0163743 4 3 1 930 261 336 122 1797 363 1220 185 0 0.963 -0.0163743
159774 0.4753813 1 4 1 3939 1255 292 120 2141 370 1000 183 0 2.988 0.4753813
159775 -0.0114413 2 4 1 1723 453 267 113 2241 418 844 154 0 0.974 -0.0114413
159776 0.0269423 3 4 1 977 259 283 105 1575 264 965 164 0 1.064 0.0269423
159777 -0.3036443 4 4 1 828 265 336 147 2170 574 1244 230 0 0.497 -0.3036443
159778 0.0748163 1 5 1 1029 311 296 119 1583 311 1006 182 0 1.188 0.0748163
159779 -0.1018243 2 5 1 1102 365 270 113 1843 1004 860 162 0 0.791 -0.1018243
159780 -0.0867163 3 5 1 1622 501 284 118 2497 823 970 169 0 0.819 -0.0867163
159781 -0.0150233 4 5 1 915 305 348 124 1841 342 1292 247 0 0.966 -0.0150233

Total number of rows: 9128

Table truncated, full table size 685 Kbytes.




Supplementary data files not provided
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