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Sample GSM5388 Query DataSets for GSM5388
Status Public on Apr 02, 2003
Title S52-PN1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S52-PN1
mAdb experiment ID: 25488
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 -0.0974533 1 1 1 796 203 183 69 868 249 198 87 0 0.799 -0.0974533
159763 -0.0535483 2 1 1 1142 462 167 63 1146 300 182 78 0 0.884 -0.0535483
159764 0.0211893 3 1 1 1054 273 160 64 918 255 174 72 0 1.050 0.0211893
159765 -0.0105503 4 1 1 563 197 163 65 546 164 188 73 0 0.976 -0.0105503
159766 -0.1232053 1 2 1 434 163 179 74 501 162 205 104 0 0.753 -0.1232053
159767 0.0004343 2 2 1 618 163 162 61 574 181 176 75 0 1.001 0.0004343
159768 0.0692983 3 2 1 763 166 163 62 622 191 175 73 0 1.173 0.0692983
159769 -0.0550243 4 2 1 1055 364 164 69 1064 295 181 102 0 0.881 -0.0550243
159770 -0.0385793 1 3 1 657 264 173 71 647 303 185 86 0 0.915 -0.0385793
159771 -0.0127813 2 3 1 631 204 163 64 596 215 175 76 0 0.971 -0.0127813
159772 -0.1884253 3 3 1 382 180 166 66 487 187 196 78 0 0.648 -0.1884253
159773 -0.1426683 4 3 1 415 144 171 61 481 157 185 86 0 0.720 -0.1426683
159774 0.1051693 1 4 1 1161 493 178 66 864 298 190 85 0 1.274 0.1051693
159775 -0.1214783 2 4 1 934 185 164 67 1077 353 187 77 0 0.756 -0.1214783
159776 -0.0013053 3 4 1 424 172 166 60 411 127 185 76 0 0.997 -0.0013053
159777 -0.1992833 4 4 1 372 122 171 64 469 175 191 83 0 0.632 -0.1992833
159778 -0.1611513 1 5 1 452 216 181 87 554 239 211 95 0 0.690 -0.1611513
159779 -0.2823293 2 5 1 618 220 166 70 934 339 178 77 0 0.522 -0.2823293
159780 -0.4461173 3 5 1 381 124 166 58 702 224 178 83 0 0.358 -0.4461173
159781 -0.1719853 4 5 1 359 150 168 63 437 153 189 68 0 0.673 -0.1719853

Total number of rows: 9128

Table truncated, full table size 661 Kbytes.




Supplementary data files not provided
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