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Sample GSM5368 Query DataSets for GSM5368
Status Public on Apr 02, 2003
Title S32-M1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S32-M1
mAdb experiment ID: 25464
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.2588773 1 1 1 13792 4862 320 99 7752 2450 485 117 0 1.815 0.2588773
159763 -0.0491493 2 1 1 10114 2844 378 143 11272 2125 595 197 0 0.893 -0.0491493
159764 0.3350573 3 1 1 21990 7515 387 121 10415 3056 638 139 0 2.163 0.3350573
159765 0.8655783 4 1 1 18239 2004 358 109 2899 472 514 124 0 7.338 0.8655783
159766 0.0413933 1 2 1 1883 608 326 100 1867 462 481 122 0 1.100 0.0413933
159767 0.1815583 2 2 1 7315 1480 368 153 5063 1298 588 197 0 1.519 0.1815583
159768 0.1607693 3 2 1 5954 1975 382 113 4401 1069 635 137 0 1.448 0.1607693
159769 -0.0680343 4 2 1 6269 1628 358 198 7290 1291 521 158 0 0.855 -0.0680343
159770 -0.0619813 1 3 1 3988 1437 329 110 4621 1415 490 150 0 0.867 -0.0619813
159771 0.1007153 2 3 1 4183 2214 368 113 3547 1521 587 151 0 1.261 0.1007153
159772 0.0492183 3 3 1 1950 542 391 113 1997 433 634 135 0 1.120 0.0492183
159773 -0.0824943 4 3 1 2368 546 360 197 2902 541 525 149 0 0.827 -0.0824943
159774 0.2610253 1 4 1 10452 3625 337 107 5926 1476 497 159 0 1.824 0.2610253
159775 -0.0376313 2 4 1 5204 2556 376 125 5775 2534 619 211 0 0.917 -0.0376313
159776 0.0374263 3 4 1 2116 509 416 149 2183 532 656 238 0 1.090 0.0374263
159777 -0.0639893 4 4 1 1450 318 349 108 1773 338 524 127 0 0.863 -0.0639893
159778 -0.0376313 1 5 1 2399 831 333 102 2700 688 496 132 0 0.917 -0.0376313
159779 -0.0291883 2 5 1 2476 557 388 133 2826 538 640 205 0 0.935 -0.0291883
159780 -0.1897673 3 5 1 4022 2147 442 208 6151 2820 728 390 0 0.646 -0.1897673
159781 -0.0985423 4 5 1 1369 361 357 110 1781 366 538 121 0 0.797 -0.0985423

Total number of rows: 9128

Table truncated, full table size 699 Kbytes.




Supplementary data files not provided
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