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Sample GSM5366 Query DataSets for GSM5366
Status Public on Apr 02, 2003
Title S30-M1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S30-M1
mAdb experiment ID: 25461
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.2076343 1 1 1 2600 719 362 107 1781 441 474 121 0 1.613 0.2076343
159763 -0.1163393 2 1 1 1307 274 332 103 1671 319 470 115 0 0.765 -0.1163393
159764 0.0277573 3 1 1 2357 603 292 94 2231 489 407 111 0 1.066 0.0277573
159765 0.6238693 4 1 1 1634 508 290 131 697 181 396 106 0 4.206 0.6238693
159766 0.0253063 1 2 1 644 175 357 103 742 164 487 120 0 1.060 0.0253063
159767 -0.1001793 2 2 1 701 150 337 103 901 175 469 114 0 0.794 -0.1001793
159768 -0.0376313 3 2 1 1020 265 289 91 1149 243 398 106 0 0.917 -0.0376313
159769 -0.1518113 4 2 1 745 170 282 91 1012 258 393 105 0 0.705 -0.1518113
159770 -0.3914743 1 3 1 570 149 356 104 970 213 473 125 0 0.406 -0.3914743
159771 -0.0061233 2 3 1 837 251 344 104 930 190 459 123 0 0.986 -0.0061233
159772 -0.3685563 3 3 1 391 104 297 90 622 164 415 112 0 0.428 -0.3685563
159773 -0.2596373 4 3 1 469 144 278 90 727 194 400 109 0 0.550 -0.2596373
159774 0.1303343 1 4 1 1741 510 365 102 1446 399 486 120 0 1.350 0.1303343
159775 -0.1739253 2 4 1 938 250 331 98 1318 331 465 118 0 0.670 -0.1739253
159776 -0.0030513 3 4 1 581 216 287 103 676 225 397 119 0 0.993 -0.0030513
159777 -0.1481303 4 4 1 444 101 290 98 597 155 393 101 0 0.711 -0.1481303
159778 -0.2395783 1 5 1 547 141 380 101 765 164 492 117 0 0.576 -0.2395783
159779 -0.1290113 2 5 1 570 160 354 102 780 188 506 116 0 0.743 -0.1290113
159780 -0.6946493 3 5 1 529 166 291 93 1521 593 409 181 0 0.202 -0.6946493
159781 -0.2225733 4 5 1 456 140 292 88 677 127 419 114 0 0.599 -0.2225733

Total number of rows: 9128

Table truncated, full table size 674 Kbytes.




Supplementary data files not provided
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