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Sample GSM5359 Query DataSets for GSM5359
Status Public on Apr 02, 2003
Title S28-P1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S28-P1
mAdb experiment ID: 25453
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 -0.0213633 1 1 1 2358 950 224 1276 2238 915 420 3159 0 0.952 -0.0213633
159763 -0.0423933 2 1 1 3186 1270 216 88 3029 1196 373 136 0 0.907 -0.0423933
159764 0.0119933 3 1 1 2919 728 191 80 2410 436 258 103 0 1.028 0.0119933
159765 0.7801733 4 1 1 5005 569 187 101 918 204 270 104 0 6.028 0.7801733
159766 -0.1106983 1 2 1 1728 866 226 1281 1959 957 387 3116 0 0.775 -0.1106983
159767 0.0515383 2 2 1 2039 495 215 106 1672 492 359 205 0 1.126 0.0515383
159768 0.0191163 3 2 1 1791 401 184 77 1520 297 273 131 0 1.045 0.0191163
159769 0.0382233 4 2 1 1990 345 183 76 1623 338 282 102 0 1.092 0.0382233
159770 -0.1197583 1 3 1 2098 1384 229 87 2386 1342 390 127 0 0.759 -0.1197583
159771 0.0216033 2 3 1 2996 1016 205 111 2489 973 337 200 0 1.051 0.0216033
159772 -0.0065643 3 3 1 1075 410 188 76 1008 412 278 138 0 0.985 -0.0065643
159773 0.0394143 4 3 1 1137 358 190 80 981 297 280 104 0 1.095 0.0394143
159774 0.1439513 1 4 1 3631 627 239 217 2390 875 416 139 0 1.393 0.1439513
159775 -0.0690513 2 4 1 2569 802 199 238 2579 794 326 132 0 0.853 -0.0690513
159776 -0.0254883 3 4 1 883 366 186 76 866 304 267 166 0 0.943 -0.0254883
159777 -0.0545313 4 4 1 826 243 183 199 870 261 279 106 0 0.882 -0.0545313
159778 -0.0963673 1 5 1 1981 789 236 97 2179 807 412 143 0 0.801 -0.0963673
159779 -0.0614803 2 5 1 1593 761 195 232 1609 728 303 194 0 0.868 -0.0614803
159780 -0.1226293 3 5 1 1360 321 181 136 1533 349 266 123 0 0.754 -0.1226293
159781 -0.0931263 4 5 1 1067 456 206 89 1161 419 296 169 0 0.807 -0.0931263

Total number of rows: 9128

Table truncated, full table size 663 Kbytes.




Supplementary data files not provided
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