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Sample GSM5353 Query DataSets for GSM5353
Status Public on Apr 02, 2003
Title S27-P1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S27-P1
mAdb experiment ID: 25445
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.1119343 1 1 1 1819 1017 340 134 1535 804 473 165 0 1.294 0.1119343
159763 0.0358303 2 1 1 2542 1019 367 146 2305 694 444 168 0 1.086 0.0358303
159764 0.2685783 3 1 1 2593 898 404 151 1582 549 486 162 0 1.856 0.2685783
159765 0.2309603 4 1 1 1308 413 326 134 953 293 417 155 0 1.702 0.2309603
159766 1 2 1 524 229 343 147 685 290 466 180 -50 0.768 -0.1146393
159767 0.1752223 2 2 1 1509 435 365 205 1173 314 463 160 0 1.497 0.1752223
159768 -0.0639893 3 2 1 1311 470 389 208 1469 388 477 166 0 0.863 -0.0639893
159769 0.0378253 4 2 1 1982 583 338 139 1859 449 459 199 0 1.091 0.0378253
159770 -0.2380723 1 3 1 1022 449 352 155 1592 569 516 180 0 0.578 -0.2380723
159771 0.0845763 2 3 1 1100 488 360 156 1027 348 461 169 0 1.215 0.0845763
159772 3 3 1 544 277 361 150 651 202 465 158 -50 0.914 -0.0390543
159773 0.1430153 4 3 1 1118 345 358 178 980 305 472 176 0 1.390 0.1430153
159774 0.1020913 1 4 1 1569 1067 334 139 1370 810 463 167 0 1.265 0.1020913
159775 -0.1214783 2 4 1 1598 624 361 146 1969 811 448 170 0 0.756 -0.1214783
159776 -0.0609803 3 4 1 570 262 322 145 692 253 427 181 0 0.869 -0.0609803
159777 0.1055103 4 4 1 838 366 315 136 777 266 396 136 0 1.275 0.1055103
159778 -0.1174753 1 5 1 663 367 328 133 827 365 419 155 0 0.763 -0.1174753
159779 -0.0168253 2 5 1 1358 645 391 202 1437 507 503 215 0 0.962 -0.0168253
159780 0.3330443 3 5 1 2666 956 360 149 1431 392 436 162 0 2.153 0.3330443
159781 0.0696683 4 5 1 814 263 316 128 824 325 430 169 0 1.174 0.0696683

Total number of rows: 9128

Table truncated, full table size 687 Kbytes.




Supplementary data files not provided
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