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Sample GSM5344 Query DataSets for GSM5344
Status Public on Apr 02, 2003
Title S25-M1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S25-M1
mAdb experiment ID: 25434
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.2322343 1 1 1 3724 951 265 97 1974 585 380 162 0 1.707 0.2322343
159763 0.1631613 2 1 1 2441 518 212 77 1470 291 266 95 0 1.456 0.1631613
159764 -0.0716043 3 1 1 2349 754 201 78 2275 688 282 95 0 0.848 -0.0716043
159765 0.5428253 4 1 1 2784 595 189 570 849 186 264 245 0 3.490 0.5428253
159766 0.0224283 1 2 1 718 200 243 89 732 177 377 114 0 1.053 0.0224283
159767 -0.0227343 2 2 1 1199 300 211 79 1104 226 285 94 0 0.949 -0.0227343
159768 -0.0594843 3 2 1 5057 1872 210 605 4665 1269 293 163 0 0.872 -0.0594843
159769 -0.0204523 4 2 1 1800 501 188 69 1603 344 274 89 0 0.954 -0.0204523
159770 -0.2291483 1 3 1 697 297 235 84 988 404 372 112 0 0.590 -0.2291483
159771 -0.0287243 2 3 1 1329 328 214 81 1231 330 294 97 0 0.936 -0.0287243
159772 0.0132593 3 3 1 717 194 207 75 682 230 293 92 0 1.031 0.0132593
159773 -0.0457573 4 3 1 1107 349 195 73 1087 356 290 97 0 0.900 -0.0457573
159774 0.3571723 1 4 1 5711 1544 239 86 2264 673 373 108 0 2.276 0.3571723
159775 -0.1331223 2 4 1 3176 833 220 200 3467 789 308 119 0 0.736 -0.1331223
159776 -0.0268723 3 4 1 724 256 214 80 705 282 278 114 0 0.940 -0.0268723
159777 0.0310043 4 4 1 691 213 201 78 651 231 292 115 0 1.074 0.0310043
159778 0.0013013 1 5 1 565 221 240 85 638 196 383 110 0 1.003 0.0013013
159779 -0.0264103 2 5 1 838 198 211 212 827 222 303 114 0 0.941 -0.0264103
159780 -0.8356473 3 5 1 305 130 206 88 825 438 290 115 0 0.146 -0.8356473
159781 -0.0579923 4 5 1 855 421 203 70 871 413 285 102 0 0.875 -0.0579923

Total number of rows: 9128

Table truncated, full table size 673 Kbytes.




Supplementary data files not provided
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