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Sample GSM5343 Query DataSets for GSM5343
Status Public on Apr 02, 2003
Title S24-P1
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S24-P1
mAdb experiment ID: 25433
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 -0.1518113 1 1 1 1691 807 245 88 2196 577 411 128 0 0.705 -0.1518113
159763 -0.0819703 2 1 1 8463 3117 238 248 8999 2865 360 129 0 0.828 -0.0819703
159764 0.0755473 3 1 1 2084 513 228 83 1729 337 372 169 0 1.190 0.0755473
159765 4 1 1 1572 577 409 23331 1573 263 691 24431 -50 1.147 0.0595633
159766 -0.1001793 1 2 1 945 419 260 138 1180 347 429 169 0 0.794 -0.1001793
159767 0.0603203 2 2 1 1486 464 238 207 1295 354 350 116 0 1.149 0.0603203
159768 0.0449323 3 2 1 1443 420 235 87 1333 314 385 113 0 1.109 0.0449323
159769 -0.0867163 4 2 1 2044 678 353 16282 2398 511 601 16819 0 0.819 -0.0867163
159770 -0.1636763 1 3 1 1111 433 258 92 1501 424 419 138 0 0.686 -0.1636763
159771 -0.0535483 2 3 1 930 438 241 89 1030 354 352 125 0 0.884 -0.0535483
159772 -0.0639893 3 3 1 496 193 238 82 654 290 394 108 0 0.863 -0.0639893
159773 -0.1295963 4 3 1 864 241 329 125 1182 243 555 184 0 0.742 -0.1295963
159774 0.1607693 1 4 1 2285 847 279 90 1684 426 479 143 0 1.448 0.1607693
159775 -0.0990873 2 4 1 1758 596 234 106 2012 442 347 125 0 0.796 -0.0990873
159776 -0.1157713 3 4 1 634 216 243 91 842 232 398 108 0 0.766 -0.1157713
159777 -0.1630433 4 4 1 851 372 339 99 1225 327 577 132 0 0.687 -0.1630433
159778 -0.1343043 1 5 1 940 481 277 95 1258 470 472 152 0 0.734 -0.1343043
159779 -0.0614803 2 5 1 1193 308 237 105 1314 329 356 143 0 0.868 -0.0614803
159780 -0.1095793 3 5 1 939 328 246 87 1168 285 392 114 0 0.777 -0.1095793
159781 -0.1555233 4 5 1 818 172 348 120 1164 223 579 147 0 0.699 -0.1555233

Total number of rows: 9128

Table truncated, full table size 685 Kbytes.




Supplementary data files not provided
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