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Sample GSM5341 Query DataSets for GSM5341
Status Public on Apr 02, 2003
Title S23-P2
Sample type RNA
 
Channel 1
Source name hepatocellular carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name non-cancerous liver tissue
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description S23-P2
mAdb experiment ID: 25431
 
Submission date Apr 01, 2003
Last update date Nov 21, 2005
Contact name Xin Wei Wang
E-mail(s) [email protected]
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Lab Liver Carcinogenesis Unit
Street address 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-4255
Country USA
 
Platform ID GPL257
Series (1)
GSE364 Molecular profiling of human hepatocarcinogenesis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
159762 0.1398793 1 1 1 3412 1237 296 102 2627 762 369 123 0 1.380 0.1398793
159763 0.4197913 2 1 1 9740 2986 358 110 3909 1167 340 108 0 2.629 0.4197913
159764 0.1283993 3 1 1 3327 749 161 68 2601 752 246 79 0 1.344 0.1283993
159765 0.2013973 4 1 1 1486 309 158 63 1082 203 247 82 0 1.590 0.2013973
159766 0.2817153 1 2 1 3074 1343 279 88 1817 1106 356 135 0 1.913 0.2817153
159767 0.4765423 2 2 1 6199 1989 425 153 2291 457 364 116 0 2.996 0.4765423
159768 0.3149203 3 2 1 2673 1300 176 66 1463 422 254 83 0 2.065 0.3149203
159769 -0.0366843 4 2 1 2163 508 163 75 2417 302 240 90 0 0.919 -0.0366843
159770 0.6200323 1 3 1 7510 3965 323 2141 2134 1041 410 10027 0 4.169 0.6200323
159771 0.3314273 2 3 1 2776 719 380 129 1514 558 397 123 0 2.145 0.3314273
159772 0.4676083 3 3 1 1791 594 165 65 790 534 236 82 0 2.935 0.4676083
159773 0.2365373 4 3 1 1237 344 158 69 877 332 251 151 0 1.724 0.2365373
159774 0.4202863 1 4 1 8044 2277 297 102 3312 854 369 113 0 2.632 0.4202863
159775 0.1983823 2 4 1 3682 1619 313 153 2472 623 339 124 0 1.579 0.1983823
159776 0.6473833 3 4 1 2802 2101 169 67 854 374 261 91 0 4.440 0.6473833
159777 0.1628633 4 4 1 907 314 152 56 772 318 253 81 0 1.455 0.1628633
159778 0.8238003 1 5 1 12278 6542 267 87 2136 354 334 105 0 6.665 0.8238003
159779 0.6589653 2 5 1 8355 4447 210 81 2076 375 290 89 0 4.560 0.6589653
159780 0.3193143 3 5 1 2106 617 166 72 1178 683 248 84 0 2.086 0.3193143
159781 0.5707763 4 5 1 1855 1228 169 73 702 332 249 96 0 3.722 0.5707763

Total number of rows: 9128

Table truncated, full table size 670 Kbytes.




Supplementary data files not provided
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